Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1415 a.a., DNA-directed RNA polymerase, beta' subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 1611 bits (4171), Expect = 0.0
 Identities = 814/1352 (60%), Positives = 1024/1352 (75%), Gaps = 22/1352 (1%)

Query: 16   IANIRNLKAIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYEC 75
            +A ++    I++++ASPE I  WS+GE+KKPETINYRTFKPERDGLFCA+IFGP+KDYEC
Sbjct: 13   VAPVKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYEC 72

Query: 76   NCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDM 135
             CGKYKRMK+RG++CEKCGVEV   KVRRERMGHIELAAPVAHIWFLK+LPS+IGT+LDM
Sbjct: 73   LCGKYKRMKYRGVICEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGTMLDM 132

Query: 136  TMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLL 195
            T+ DLE++LYF++Y+V++PG T+LT  Q+++E+++L   D YG DA T  +GAEA+R +L
Sbjct: 133  TLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEFLDAQDAYGMDAFTANIGAEAIREML 192

Query: 196  EELNLEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPEL 255
              ++LE    QLR +      + K KK+ KRLK+VE FLES N+PEWMV+ V+PVIPPEL
Sbjct: 193  AAIDLETEAEQLRADLAEATGELKPKKIIKRLKLVENFLESGNRPEWMVLTVVPVIPPEL 252

Query: 256  RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDN 315
            RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDIIIRNEKRMLQE+VDALFDN
Sbjct: 253  RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDN 312

Query: 316  GRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLP 375
            GRRGR ITG N RPLKSLSDM+KGKQGRFRQNLLGKRVD+SGRSVIV GP+LKLHQCGLP
Sbjct: 313  GRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLP 372

Query: 376  KKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTL 435
            KKMALELFKPFIYS LE +GL+ST+K AKK+VE+E   VWDIL+EV+RE+P+MLNRAPTL
Sbjct: 373  KKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVMLNRAPTL 432

Query: 436  HRLGIQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNN 495
            HRLGIQ+FEP+L+EGKAIQLHPLVCSA+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNN
Sbjct: 433  HRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNN 492

Query: 496  ILSPANGSPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARIN 555
            +LSPANG+P+IVPSQD++LGLYY+T++R    G+ M F +P EV  A  AG V LH++I 
Sbjct: 493  VLSPANGAPIIVPSQDMILGLYYITLEREGLPGQGMIFGSPEEVEHALTAGTVHLHSKIQ 552

Query: 556  VRM--------EDGKVVRTTVGRILVWELLP--HCVPFSMVNTTLTKKNIARLVSTAYRD 605
             R+        E  K   TT GR+ +  LLP     PF +VN  L KK + +++ T YR 
Sbjct: 553  ARVKQIDDEGNEIYKRYETTPGRVRLGALLPLNAKAPFELVNRLLRKKEVQQVIDTVYRY 612

Query: 606  AGTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDG 665
             G K +VI CD++  +G+  A +AG++    D+ IP TK  ++E  +++V + E+QY DG
Sbjct: 613  CGQKESVIFCDQIMTLGFREAFKAGISFGKDDMLIPDTKWDIVEGVRDQVKEFEQQYMDG 672

Query: 666  IITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGA 725
            +IT+ EKYNKVVD W+K + +V++EM+ EIS D   DP T   +     NS+YMM+ SGA
Sbjct: 673  LITQGEKYNKVVDAWSKCSDEVASEMMDEISRDRF-DPDT---KEQMEPNSVYMMAHSGA 728

Query: 726  RGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKT 785
            RG+  QM+QL GMRGLMAKPSGEIIETPI S+F+EGL+VL+YF STHGARKGLADTALKT
Sbjct: 729  RGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT 788

Query: 786  ANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYD 845
            ANSGYLTRRLVDV QD IV  +DCGT + I        GE+   L +R LGRV    V D
Sbjct: 789  ANSGYLTRRLVDVAQDCIVRLNDCGTENAITAEAAVNDGEVVASLGERVLGRVAAEDVVD 848

Query: 846  PETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVN 905
            P + +++  +  L+DE  A ++ +  + S+ +RS LTC++D G+C  CYGRDLARG  VN
Sbjct: 849  PASGEVIVAKGELIDERKADLIEQSSIQSMRMRSPLTCEADEGVCAQCYGRDLARGTKVN 908

Query: 906  IGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRD 965
            +GE VGIIAAQSIGEPGTQLTMRTFHIGG A    ++S  EA   G++       + N  
Sbjct: 909  VGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGG-QQSFQEAGQEGKIAFRNANLLENTS 967

Query: 966  GQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSE 1025
            G+ +VMG++ QL IVD +G ER  + L  G+++ V EG+++ +G  L EWDP+  P ++E
Sbjct: 968  GEKIVMGRNMQLLIVDGEGAERASFKLGYGTKVHVAEGDKVGRGDKLFEWDPYTLPIIAE 1027

Query: 1026 VDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYRT----TNFRPSISICD-EHGEVKMR 1080
              GV+RF+D+V G + +E+ D+AT MT + + ++R     ++ +P + I D E GE    
Sbjct: 1028 KSGVVRFADLVSGISVREETDDATGMTQKIVSDWRAAPKGSDLKPEVLIADPETGEPVRN 1087

Query: 1081 GNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPK 1140
                P TY + V AI+ +++G  + AGD++AR PRE +KTKDI GGLPRVAELFE R+PK
Sbjct: 1088 DAGNPVTYPMSVDAILSIEDGMPISAGDVVARIPREGAKTKDITGGLPRVAELFEARRPK 1147

Query: 1141 DMAVVSEIAGIVTYAGETKGKRKLVVTP--EIGEAKEYLVPKGKHITVTDGDFVEAGDLL 1198
            D A+++EI G V +  + K KR++ + P  E  E  EY+VPKGKHI V +GDFV+ GD +
Sbjct: 1148 DHAIIAEIDGYVRFGRDYKNKRRISIEPSDETMEPVEYMVPKGKHIPVAEGDFVQKGDYI 1207

Query: 1199 TEGHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG 1258
             +G+P  HDILR  G + LA YL +E+Q+VYR QGV I+DKHIEVIVRQML+K  +LD G
Sbjct: 1208 MDGNPAPHDILRIMGIEALADYLINEVQDVYRLQGVKINDKHIEVIVRQMLQKWEILDSG 1267

Query: 1259 GTTFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTK 1318
             TT L GE VDK +F   N +A+ EGR PA  EP++LGIT+ASL T SFISAASFQETTK
Sbjct: 1268 ETTLLKGEHVDKLQFEAVNEKAIAEGRRPAQGEPILLGITKASLQTRSFISAASFQETTK 1327

Query: 1319 VLTEASLRGKMDYLRGLKENVIVGRLIPAGTG 1350
            VLTEAS  GK D L GLKENVIVGRLIPAGTG
Sbjct: 1328 VLTEASTMGKRDKLIGLKENVIVGRLIPAGTG 1359