Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1409 a.a., DNA-directed RNA polymerase subunit beta' from Ralstonia sp. UNC404CL21Col

 Score = 1597 bits (4136), Expect = 0.0
 Identities = 801/1351 (59%), Positives = 1019/1351 (75%), Gaps = 25/1351 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI+I +ASPE IR WS+GEVKKPETINYRTFKPERDGLFCAKIFGP+KDYEC CGKYKR+
Sbjct: 19   AIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG++CEKCGVEV  +KVRRERMGHIELAAP AHIWFLK+LPS++G +LDMT+ D+E+V
Sbjct: 79   KHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSLPSRLGMVLDMTLRDIERV 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF++++V++PG T L K Q++SED YL   D YGE      MGAE +R LL  +++E+ 
Sbjct: 139  LYFEAFVVVEPGMTALKKSQIMSEDDYLAKCDEYGEGEFVAMMGAEGIRELLRGIDIEKQ 198

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
               +R E QAT S+ K KK  KRLK++EAF  S  KP+WM++EV+PV+PPELRPLVPLDG
Sbjct: 199  IETIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPDWMILEVLPVLPPELRPLVPLDG 258

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL+EL AP+II+RNEKRMLQEAVD+L DNGRRG+A+T
Sbjct: 259  GRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQEAVDSLLDNGRRGKAMT 318

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            G N RPLKSL++MIKGK GRFRQNLLGKRVDYSGRSVIVVGP LKLHQCGLPK MALELF
Sbjct: 319  GANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKLMALELF 378

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFI+ +LE  G+A+TIK+AKK VE +  VVWDILEEV+RE+P+MLNRAPTLHRLGIQ+F
Sbjct: 379  KPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREHPVMLNRAPTLHRLGIQAF 438

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP+L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E R LM+++NN+L PANG 
Sbjct: 439  EPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGD 498

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRMEDGKV 563
            P IVPSQD+VLGLYY T D+   KGE M+F    EV+ AY+   V L +R+NVR+ + ++
Sbjct: 499  PSIVPSQDVVLGLYYTTRDKINGKGEGMTFADISEVIRAYENKEVELASRVNVRITEYEL 558

Query: 564  VR-----------------TTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDA 606
            V                  TTVGR ++ E+LP  +PFS++N  L KK I+RL++TA+R  
Sbjct: 559  VNPEADGDARFAPKITLQSTTVGRAILSEILPKGLPFSVLNKPLKKKEISRLINTAFRKC 618

Query: 607  GTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGI 666
            G + TVI  D+L   G+  ATRAG++IA+ D+ +P  K+ +I  A  +V + ++QY  G+
Sbjct: 619  GLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKIISEAAAKVKEYDKQYMSGL 678

Query: 667  ITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGAR 726
            +T  E+YN VVD+W  A   V   M+ ++ ++ V D R G      SFNSIYMM+ SGAR
Sbjct: 679  VTDQERYNNVVDIWGAAGDQVGKAMMEQLQTEDVVD-RNGNTVKQESFNSIYMMADSGAR 737

Query: 727  GNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTA 786
            G+  Q+RQLAGMRGLMAKP G IIETPIT++FREGL+VLQYF STHGARKGLADTALKTA
Sbjct: 738  GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 797

Query: 787  NSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDP 846
            NSGYLTRRLVDV QD++V E DCGT +G+ +  + EGGE+   L DR LGRV++  V +P
Sbjct: 798  NSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEALRDRILGRVVVNDVVNP 857

Query: 847  ETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNI 906
            ET++      TL+DE++  ++    V  V +R+ L+C +  G+C  CYGRDL RG +VN 
Sbjct: 858  ETQETAIEAGTLLDEDMVDLIDALGVDEVKVRTPLSCDTRYGLCAKCYGRDLGRGVLVNS 917

Query: 907  GETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRV-ILSRVKAVRNRD 965
            GE VG+IAAQSIGEPGTQLTMRTFHIGG ASR    SS EA+  G V   + ++ V N  
Sbjct: 918  GEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKATGTVRFTATMRYVTNAK 977

Query: 966  GQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSE 1025
            G+ +V+ +SG+  I DD GRERE++ +  G+ LLV +G+ I+ G  LA WDP   P +SE
Sbjct: 978  GEQIVISRSGEALITDDHGRERERHKITYGATLLVKDGQSIKAGTQLATWDPLTRPIISE 1037

Query: 1026 VDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYR-----TTNFRPSISICDEHG-EVKM 1079
              G I+F ++ EG T  ++MDE T ++T  +I+ +     T   RP + + D  G EVK+
Sbjct: 1038 YSGTIKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKGIRPQVKLLDSSGAEVKI 1097

Query: 1080 RGNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKP 1139
             G +   T    VGA+I VK+GQ +  G+++AR P E+ KT+DI GGLPRVAELFE R P
Sbjct: 1098 PGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSP 1157

Query: 1140 KDMAVVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLT 1199
            KD AV++E+ G V++  +TKGK++LV+T   G A E+L+ K K + V DG  V  G+++ 
Sbjct: 1158 KDAAVLAEVTGTVSFGKDTKGKQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIV 1217

Query: 1200 EGHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGG 1259
            EG  + HDILR +G + LA Y+ DE+Q+VYR QGV I+DKHIEVIVRQML++V ++D G 
Sbjct: 1218 EGPADPHDILRLKGVEELATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDTGD 1277

Query: 1260 TTFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKV 1319
            T F+ GEQV++ +   EN + +  G+ PAT E L+LGIT+ASL+T SFISAASFQETT+V
Sbjct: 1278 TRFIPGEQVERSDLLDENDKVIALGKRPATYENLLLGITKASLSTDSFISAASFQETTRV 1337

Query: 1320 LTEASLRGKMDYLRGLKENVIVGRLIPAGTG 1350
            LTEA++ GK+D LRGLKENVIVGRLIPAGTG
Sbjct: 1338 LTEAAIMGKVDDLRGLKENVIVGRLIPAGTG 1368