Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Burkholderia phytofirmans PsJN

 Score = 1572 bits (4071), Expect = 0.0
 Identities = 788/1352 (58%), Positives = 1015/1352 (75%), Gaps = 27/1352 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI+I +ASP+ IR WS+GEVKKPETINYRTFKPERDGLFCAKIFGP+KDYEC CGKYKR+
Sbjct: 19   AIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG++CEKCGVEV  +KVRRERMGHIELA+PVAHIWFLK+LPS++G +LDMT+ D+E+V
Sbjct: 79   KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRDIERV 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF++Y+V+DPG T L   Q+++E+ Y   ++ YG D     MGAE VR LL  +N++E 
Sbjct: 139  LYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYG-DEFRAEMGAEGVRELLRAINIDEQ 197

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
               LR E + T S+ K KK  KRLK++EAF  S  KP+WMV+EV+PV+PPELRPLVPLDG
Sbjct: 198  VEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLEVLPVLPPELRPLVPLDG 257

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL+EL AP+II+RNEKRMLQEAVD+L DNGRRG+A+T
Sbjct: 258  GRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQEAVDSLLDNGRRGKAMT 317

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            G N RPLKSL+DMIKGK GRFRQNLLGKRVDYSGRSVIVVGP LKLHQCGLPK MALELF
Sbjct: 318  GANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKLMALELF 377

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFI+++LE  G+A+TIK+AKK VE +  VVWDILEEV+RE+P+MLNRAPTLHRLGIQ+F
Sbjct: 378  KPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHPVMLNRAPTLHRLGIQAF 437

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP+L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E R LM+++NN+L PANG 
Sbjct: 438  EPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGD 497

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM----- 558
            P IVPSQDIVLGLYY T +    KGE ++F    E + AY+   V L +R+NVR+     
Sbjct: 498  PSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENKEVELASRVNVRITEMVH 557

Query: 559  -EDGK-----------VVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDA 606
             ED             +  TTVGR ++ E+LP  +PFS++N  L KK I+RL++TA+R  
Sbjct: 558  NEDKSEGAPAFVPKITLYPTTVGRAILSEILPPGLPFSVLNKPLKKKEISRLINTAFRKC 617

Query: 607  GTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGI 666
            G + TVI  D+L   G+  ATRAG++I V D+ +P  K+ ++  A  +V + +RQY  G+
Sbjct: 618  GLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVGDAAKKVKEYDRQYMSGL 677

Query: 667  ITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGAR 726
            +T  E+YN VVD+W+  ++ V   M+ ++S++ V D R G +    SFNSIYMM+ SGAR
Sbjct: 678  VTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTD-RDGNETRQESFNSIYMMADSGAR 736

Query: 727  GNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTA 786
            G+  Q+RQLAGMRGLMAKP G IIETPIT++FREGL+VLQYF STHGARKGLADTALKTA
Sbjct: 737  GSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 796

Query: 787  NSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDP 846
            NSGYLTRRLVDV QD++V E DCGT +G+ +  + EGGE+   L DR LGRV +  V +P
Sbjct: 797  NSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALRDRILGRVTVADVVNP 856

Query: 847  ETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNI 906
            E+++ L+   TL+DE+  + +    +  V +R+ LTC++  G+C  CYGRDL RG  VN+
Sbjct: 857  ESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLCAACYGRDLGRGSSVNV 916

Query: 907  GETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRV-ILSRVKAVRNRD 965
            GE VG+IAAQSIGEPGTQLTMRTFHIGG ASR    SS EA+  G V   + ++ V N  
Sbjct: 917  GEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVRFTATMRYVTNAK 976

Query: 966  GQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSE 1025
            G+ +V+ +SG+  I DD GRERE++ +P G+ LL  +G +I+ G  LA WDP   P ++E
Sbjct: 977  GEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAGTQLATWDPMTRPIITE 1036

Query: 1026 VDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYR------TTNFRPSISICDEHG-EVK 1078
              G ++F ++ EG T  +++D+ T ++T  +I+ +      +   RP + + D +G EVK
Sbjct: 1037 WGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKTVRPQVKLLDANGEEVK 1096

Query: 1079 MRGNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRK 1138
            +            VGA+I VK+GQ +Q G+++AR P E+ KT+DI GGLPRVAELFE R 
Sbjct: 1097 IPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVESQKTRDITGGLPRVAELFEARS 1156

Query: 1139 PKDMAVVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLL 1198
            PKD  +++E+ G  ++  +TKGK++LV+T   G   E+L+ K K + V DG  V  G+++
Sbjct: 1157 PKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIAKEKQVLVHDGQVVNKGEMI 1216

Query: 1199 TEGHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG 1258
             +G  + HDILR +G + L+RY+ DE+Q+VYR QGV I+DKHIEVIVRQML++V + D G
Sbjct: 1217 VDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNG 1276

Query: 1259 GTTFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTK 1318
             T F+ GEQV++ +   EN R + E + PAT E ++LGIT+ASL+T SFISAASFQETT+
Sbjct: 1277 DTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASLSTDSFISAASFQETTR 1336

Query: 1319 VLTEASLRGKMDYLRGLKENVIVGRLIPAGTG 1350
            VLTEA++ GK D LRGLKENVIVGRLIPAGTG
Sbjct: 1337 VLTEAAIMGKRDDLRGLKENVIVGRLIPAGTG 1368