Pairwise Alignments

Query, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  267 bits (682), Expect = 5e-76
 Identities = 155/337 (45%), Positives = 207/337 (61%), Gaps = 13/337 (3%)

Query: 8   IIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGA 67
           IIG++  + +VFR +G+++ +  +VL+ GESGTGKEL+  ALH +S RAQ+PF+ +N  A
Sbjct: 141 IIGEAPAMQEVFRAIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAQKPFIALNMAA 200

Query: 68  IPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEK 127
           IPKDL+ESELFGHEKGAFT A   R GRFE A+GGT+FLDEIG+M L +Q ++LRVL + 
Sbjct: 201 IPKDLIESELFGHEKGAFTGANTVRQGRFEQANGGTLFLDEIGDMPLDIQTRLLRVLADG 260

Query: 128 EIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDIL 187
           +  RVGG    KVDVRIVAAT+++LE+ V  G+FREDL++RLNVI +H+P LRER  DI 
Sbjct: 261 QFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLFHRLNVIRIHIPSLRERRQDIE 320

Query: 188 VLAEHFLERFCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDPA 247
            L +HFL    +        L P T  +L    WPGN+R+LEN    ++++A G  V P+
Sbjct: 321 KLTKHFLALAAKELGVEMKTLNPRTVDILTKLDWPGNVRQLENMCRWLTVMASGSEVLPS 380

Query: 248 DLPRKLLDEVGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGLKDFLDT 307
           DLP +LL E               A+H  +          W   A        L   L  
Sbjct: 381 DLPSELLSE-------------RKASHFDNDISWQKQLETWAKSALASGETELLAYALPE 427

Query: 308 MEDRLLQEALAMAEGVKNQAAEILGIKRTTLIEKLKK 344
            E  LL+ AL    G K +AA++LG  R TL  KLK+
Sbjct: 428 FERILLEAALHHTNGHKQEAAKVLGWGRNTLTRKLKE 464