Pairwise Alignments

Query, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  280 bits (717), Expect = 4e-80
 Identities = 159/350 (45%), Positives = 219/350 (62%), Gaps = 16/350 (4%)

Query: 8   IIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGA 67
           ++GQS  + +V  ++ +V+ T++ VL+ GESGTGKE++ R +H +S R   PFVPINCGA
Sbjct: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196

Query: 68  IPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEK 127
           IP +LLESELFGHEKGAFT AI +R GRFELA+GGT+FLDEIG+M + +QVK+LRVLQE+
Sbjct: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256

Query: 128 EIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDIL 187
             ERVGG  T K +VR++AAT+R+LE  +   +FREDLYYRLNV P+ +P LR+R  DI 
Sbjct: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316

Query: 188 VLAEHFLERFCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDPA 247
           +L +  + R  E +    +   P     +  + WPGN+REL N +ER+ IL    +VD  
Sbjct: 317 LLLQELMTRM-EAEGAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVN 375

Query: 248 DLPRKLLDEVGDIVTL-PEPA----------PVAPAAHAADVCRPAGGGF--DWPTIADM 294
            LP K      DI    PEP+           V     A D        F  D      +
Sbjct: 376 HLPTKY--RYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQAL 433

Query: 295 RQRGMGLKDFLDTMEDRLLQEALAMAEGVKNQAAEILGIKRTTLIEKLKK 344
              G+ LK+ L  +E  L+ +AL    GV  +AA++LG++RTTL+EK++K
Sbjct: 434 PPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRK 483