Pairwise Alignments

Query, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 322 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score =  110 bits (276), Expect = 4e-29
 Identities = 81/322 (25%), Positives = 159/322 (49%), Gaps = 10/322 (3%)

Query: 16  IAMLAAGSYAEAAKRITIRLAHPMAPGNNVTLGYEKFKEIVEAKSNGKVRIQLFGNCMLG 75
           IA L     A+AA  + I++A     G    +  E   + +E +SNG+++ + F   +LG
Sbjct: 9   IAALPLAFLAQAAHALDIKIADIHPKGYPTVVAEESMGKTLEKESNGELKFKYFPGGVLG 68

Query: 76  SDRVTMEATQRGTLEMASSSSPNMTNFSKEMMVFDLPYITSPEHQEKLYKALDEGALGER 135
           S++  +E  Q G ++M+  S   +     ++ VF++P+I   +      +A+ +G +G+ 
Sbjct: 69  SEKEVIEQMQTGAVQMSRVSLGIVGPVVPDVNVFNMPFIFRDQAH---MRAVIDGDVGDA 125

Query: 136 -LDAIA-AGIGLKPIMYSEYGYRNFATTKKPIKTADDLKNLKVRTTDSPIEVAVASALGM 193
            LD I  +  GL  + + + G RN  T KKP+   +DLK +K+R   +P+ +   +A+G 
Sbjct: 126 ILDRITNSEFGLVALAWMDGGTRNLYT-KKPVHKLEDLKGMKIRVQGNPMFIETFNAMGA 184

Query: 194 NPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRHAMDSAHNYSMHLLMINKAYF 253
           N   +  GE ++ALQ G +DG  N    L +  H +  ++   + H      ++++K  +
Sbjct: 185 NGIAMDTGEIFSALQTGVIDGAENNPPTLLEHNHYQNAKYYSLTGHLILPEPIVMSKITW 244

Query: 254 DKLPADVQQILVDSGKEALAYQRAISNDLEKKAEQAFVERGIVITKLAPEERAKMRELTR 313
           +KL  + Q ++  + K A A +R + +     +E+     G+   +    ++    + T 
Sbjct: 245 NKLTPEQQDMVKKAAKAAQAEERVLWDKKSTASEEKLKAAGV---EFITVDKKPFYDATA 301

Query: 314 PVWDKFSNDIPADLVKLVQETQ 335
           P+  K+     ADL+K ++  Q
Sbjct: 302 PIRAKYGAPY-ADLIKRIEAVQ 322