Pairwise Alignments

Query, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  138 bits (347), Expect = 2e-37
 Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 4/281 (1%)

Query: 56  VEAKSNGKVRIQLFGNCMLGSDRVTMEATQRGTLEMASSSSPNMTNFSKEMMVFDLPYIT 115
           V  + NGK  +Q+F N  L  D   +EA   G +++A+ S      F+K+  +FDLP++ 
Sbjct: 55  VNEEMNGKACMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLF 114

Query: 116 SPEHQEKLYKALDEGALGERLDAIAAGIGLKPIMYSEYGYRNFATTKKPIKTADDLKNLK 175
                   +++    A GE L       G+K + +   G +  +  K PI    D K LK
Sbjct: 115 EDVDAVDRFQS---SAKGEELKNAMTRRGVKGLEFWHNGMKQISANK-PILVPADAKGLK 170

Query: 176 VRTTDSPIEVAVASALGMNPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRHAM 235
            R   S + VA    +G NP  +S+ ETY  LQ   +DG+ NT+  +   K+ EV     
Sbjct: 171 FRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTT 230

Query: 236 DSAHNYSMHLLMINKAYFDKLPADVQQILVDSGKEALAYQRAISNDLEKKAEQAFVERGI 295
           ++ H    +L++ +  ++D LPADV+        E    + A SN +E+  +Q  +E G 
Sbjct: 231 ETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGG 290

Query: 296 VITKLAPEERAKMRELTRPVWDKFSNDIPADLVKLVQETQQ 336
           V+  L PE+R +  +  +PVW KF  DI ADL++      Q
Sbjct: 291 VVRTLTPEQRQQWVDALKPVWQKFEKDIGADLIEAALAANQ 331