Pairwise Alignments

Query, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 67/325 (20%), Positives = 145/325 (44%), Gaps = 30/325 (9%)

Query: 16  IAMLAAGSYAEAAKRITIRLAHPMAPGNNVTLGYEKFKEIVEAKSNGKVRIQLFGNCMLG 75
           IA+L   + A      T+++    + G+      +   + +E  S G++++ L+ +  LG
Sbjct: 9   IAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLG 68

Query: 76  SDRVTMEATQRGTLEMASSSSPNMTNFSKEMMVFDLPYITSP-EHQEKLYKALDEGALGE 134
            DR  ++    G L++  +    M  +        LPY+    +H  +++++        
Sbjct: 69  DDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFES-------- 120

Query: 135 RLDAIAAGIGLKPIMYSEYGYRNF---------ATTKKPIKTADDLKNLKVRTTDSPIEV 185
                  G G++  M  ++ +R            T+ +P+ + +D K LK+R  ++   +
Sbjct: 121 -----DFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNL 175

Query: 186 AVASALGMNPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRHAMDSAHNYSMHL 245
             A   G +PTP+S+ E Y ALQ   VDG+ N    +   K  EV ++   + H  +  +
Sbjct: 176 NYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQM 235

Query: 246 LMINKAYFDKLPADVQQILVDSGKEAL--AYQRAISNDLEKKAEQAFVERGIVITKLAPE 303
           ++I+++ + KL +D  + ++    + +  A+ + +    E +    F   GI +T     
Sbjct: 236 VIISESTWQKL-SDTDKDIIQKAVQKVGDAHTQTVKTQ-EAELVSFFKSEGINVTY---P 290

Query: 304 ERAKMRELTRPVWDKFSNDIPADLV 328
           +    RE  +P++ +F ++I   +V
Sbjct: 291 DLEPFREAMQPLYKEFDSNIGQPIV 315