Pairwise Alignments

Query, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 323 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  104 bits (259), Expect = 3e-27
 Identities = 81/324 (25%), Positives = 145/324 (44%), Gaps = 26/324 (8%)

Query: 16  IAMLAAGSYAEAAKRITIRLAHPMAPGNNVTLGYEKFKEIVEAKSNGKVRIQLFGNCMLG 75
           +A L   S A A +  T+RL      G+    G  +   I++ KS G++ +++F N  LG
Sbjct: 10  LAGLLMASQAMAQEARTLRLGMQGTAGDPQFEGVTEAARIIKEKSGGRLTLEIFPNSQLG 69

Query: 76  SDRVTMEATQRGTLEMASSSSPNMTNFSKEMMVFDLPYITSP-EHQEKLYKALDEGALGE 134
           +    ME    G L+   +    M  +    ++    Y+    +H +K+           
Sbjct: 70  TFTEMMEQVTLGELDFTLNPFGGMDAWVPRAVLASTAYVVGDFDHLQKII---------- 119

Query: 135 RLDAIAAGIGLKPIMYSEYGYR---------NFATTKKPIKTADDLKNLKVRTTDSPIEV 185
              A   G G+   M +E+ +R            T KKPI+   D   +K+R  +S   +
Sbjct: 120 ---ASDWGKGIVDEMRTEHKWRMVDSWYFGTRHTTAKKPIEKPADFAGMKLRVPNSAPLL 176

Query: 186 AVASALGMNPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRHAMDSAHNYSMHL 245
             A A+G +PTPV++ E Y ALQ   VDG+ N   +++  K TEV  H   + H     +
Sbjct: 177 TWAKAMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQSHVSLTGHLVQDQV 236

Query: 246 LMINKAYFDKLPADVQQILVDSGKEALAYQRAISNDLEKKAEQAFVERGIVITKLAPEER 305
           +++++  ++ L    Q++++++ +   A    + +D E      F ERGI + +    ++
Sbjct: 237 ILMSEDTWNALEPADQKVVMEAFEAGGALNDKLVSDKEANLVSDFRERGITVVE---PDK 293

Query: 306 AKMRELTRPVWDKFSNDIPADLVK 329
           A  +E  +PV+        AD VK
Sbjct: 294 AAFQEAMKPVYADLDAKFGADTVK 317