Pairwise Alignments

Query, 321 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 317 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  146 bits (369), Expect = 6e-40
 Identities = 110/324 (33%), Positives = 155/324 (47%), Gaps = 31/324 (9%)

Query: 16  KSFFVAAFCAALVLCMS-PLADAKRMGGGGSFGSRPSMQRSFTPTPQQAPQMQRQQTPTQ 74
           K  FVA   A + L +     +AKR+GGGGS G + S       +P  AP  Q Q    +
Sbjct: 2   KKAFVALIVAVMTLSVGISTVEAKRLGGGGSIGKQSSSASRQAQSP--APMQQNQAAAAK 59

Query: 75  QGINQQNPGAAQ-QPGMAQQPRRGLFGGMGGFLGGMLAGGLLGSLFFGGGFGGMPGILDM 133
                  P AA  +P M +       G +GG L G+  G LL     GG    M  I  +
Sbjct: 60  PAAPAAAPAAAAAKPSMWK-------GLLGGALLGLGLGALLSHFGLGGALASM--ISTI 110

Query: 134 LLLALVAYGIFKFISM-RRQAANPQPAAAGYGAHTSPSDNDNGWGTLRS----------A 182
           L +AL+A  I   + M RR++   QPA A  GA    +DN +    + S          A
Sbjct: 111 LTVALIALAIMFVVRMFRRKSEASQPAPAWAGAAPQAADNASATPQIGSMLKTDQSAAAA 170

Query: 183 PQGGT-----TYQEQAGPEVPAGFDIEQFIKGAKMAFTRLQASWDKRDLEDISQFSTPAV 237
            QGG        ++     VPAGFD   F++ AK  F RLQA+WDK D+ DI +F+TP +
Sbjct: 171 TQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEM 230

Query: 238 LDEIRRQ-AEADPVPSTTEILLVNANLLGVVEENGQQTATVFFDVLLREDPRQDAPTSVR 296
             E+R Q  E     + T+++ ++A +LGV        A+V F   ++EDP   +P    
Sbjct: 231 FAELRLQIQERGAASNQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTA-SPAQFA 289

Query: 297 EVWHFVRPVKGTGMWQLDGIQQVD 320
           E+W+  +P  G G W L GIQQ+D
Sbjct: 290 EIWNLSKPAAGQGGWVLAGIQQID 313