Pairwise Alignments

Query, 243 a.a., chemotaxis MotB protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 301 a.a., Flagellar motor protein from Sphingomonas koreensis DSMZ 15582

 Score =  105 bits (261), Expect = 1e-27
 Identities = 87/269 (32%), Positives = 128/269 (47%), Gaps = 48/269 (17%)

Query: 2   GGGKGGGSWKVAYADFVTAMMAFFLLMWILNMTSKETKEGLAGYFSSDAAKMQSNNV--S 59
           GGG  GG+WKVAYADFVTAMMAFFLLMW+L  T+++ ++ LA YF+    + + N+   +
Sbjct: 25  GGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATNEKQRKALADYFAPTLIEFKQNSAGSN 84

Query: 60  PVANNPFVQSTDKLDTR------------------DFKITEVE---RSHYAIAQKLRQ-- 96
            +     +Q  D   T                   DF  T  +   ++  A+  + RQ  
Sbjct: 85  GLLGGDAMQGKDNYPTMAKQTGTRSMTIPAGAQGGDFVGTGEQGSLKNKEAMDAQDRQGF 144

Query: 97  -MLMADATPQSASGISADDVGVQLR-------VNSDI-------MYAPGSAELAPEGAKV 141
             + A+   +  S      +G Q+R       +  D+       M+A G+    PE AK+
Sbjct: 145 AKMKAEIERKIKSTPGLTKLGKQVRFVPTREGMRIDLMDDADYSMFALGTTNFVPEAAKL 204

Query: 142 LDDVIRILKEYNLYLVVRGHTDS---GEPRNSIYPSNWELSGARAAAAVRYIITHGEIKP 198
           ++ V R + +    L++RGHTDS   G+PRN    +NW LS AR+    R ++  G  +P
Sbjct: 205 VELVARSIADSQNPLMIRGHTDSLGYGDPRNM---NNWMLSSARSEETRRRLVAAGVPEP 261

Query: 199 TRLRSIAYADTRPLEPNTSPDSRAKNRRV 227
              R    AD  PL      D R  NRRV
Sbjct: 262 RFERIEGVADREPLIKANPADPR--NRRV 288