Pairwise Alignments

Query, 473 a.a., MATE efflux family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 5/303 (1%)

Query: 19  RLTWPQMLMMLFQFIIGFTDVWVAGRINPDVQASLGIVNQCMFFLLVVAVALSNGAVAAV 78
           ++T P ML +L        D +   ++  +  A++         L  +AV +  G    +
Sbjct: 18  KMTLPNMLGILTILGFSLVDTFFVSQLGTEALAAISFTFPVTLVLSSIAVGIGAGVSTNL 77

Query: 79  GQALGAGLLARARRYVSLILWGGALCGGVVAASGLVAADALLHVLMVPERIMPVASYFWH 138
           G+ +G+G    A+ ++   L       G +A+ GL+  D L  +L   E+ +P+   +  
Sbjct: 78  GRLIGSGHAPDAKVFLHDALLLTFAIVGTLASLGLMFIDPLFSLLGANEQSLPLIHEYML 137

Query: 139 VYLLTLPAHYLFTISNAAFRARKDVIAPLLTMVVVSVVNAVASAGFGLGLWGLPDFGYAG 198
           V+ L  P   L  + N   R+  D  +P   M + +++N +       GL   P     G
Sbjct: 138 VWYLGSPLLVLLMVGNQGLRSTGDTKSPAKIMALAAIINLILDPLLIFGLGPFPRLEIQG 197

Query: 199 VAWGTFWSVLAGAALNVVLLRRGGMVQGVSMPPWRWIRCGAPYLVKVAAPAAAMQVLWHM 258
            A  +  S +   +L+  LL     +  ++   W  ++     L  +A PAA M ++  +
Sbjct: 198 AAIASVISWVLAMSLSSYLLIVKRHMLALTEIAWPRLKDNWRKLAHIAQPAALMNLMNPI 257

Query: 259 GYLVLFAITGSLPAPADSVNALAGLTAGMRVESLIFLPAFAFNMTASILVGHLLGAGLRD 318
              V+ A+   +        A+A   AG R+ES++ +   A + +    V   LGAG   
Sbjct: 258 ANAVIMAMLARIDH-----GAVAAFGAGTRLESVLLIVVMALSSSLMPFVAQNLGAGQHQ 312

Query: 319 DAR 321
            AR
Sbjct: 313 RAR 315



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 13  SFRGIWRLTWPQMLMMLFQFIIGFTDVWVAGRINPDVQASLGIVNQCMFFLLVVAVALSN 72
           ++R +  +  P  LM L   I     + +  RI+    A+ G   +    LL+V +ALS+
Sbjct: 237 NWRKLAHIAQPAALMNLMNPIANAVIMAMLARIDHGAVAAFGAGTRLESVLLIVVMALSS 296

Query: 73  GAVAAVGQALGAGLLARARRYVSLILWGGALCGGVVAASGLVAADALLHVLMVPERIMPV 132
             +  V Q LGAG   RAR  + + L    L   ++    L+ A  +  +     +++  
Sbjct: 297 SLMPFVAQNLGAGQHQRARDALMMSLRFVLLFQFLLYLPLLLLAGPIAGLFSDEPKVVEW 356

Query: 133 ASYFWHVYLLTLPAHY----LFTISNAAFRARKDVIAPLLTMVVVSVVNAVASAGFGLGL 188
            ++    Y++ LPA Y    +  I+  A  A    +A L+  V    +  +     G  L
Sbjct: 357 LTF----YIIALPAAYGPLGVVIITATALNAFHRPLASLIINVCRLFLLMLPLCALGSFL 412

Query: 189 WGL 191
           +G+
Sbjct: 413 YGV 415