Pairwise Alignments

Query, 397 a.a., HD domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 340 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 3/175 (1%)

Query: 193 DFRSSFTAAHSAGVAEAADALGGYCDLSPERRVVLRIAGLLHDLGKMAVPTSILEKPSGL 252
           +++ + T  H   ++  A  L     L      +L  A  +HD+GK+  P ++L+KP+ L
Sbjct: 156 EYKDNETGLHVVRMSHYARLLARQAGLPEPFCELLYNAAPMHDIGKIGTPDAVLKKPAKL 215

Query: 253 TKAEFAFMRQHTFHTYRLL-RGVDGLGGMAAWAAY-HHEKLDGSGYPFHLEGRALDPQAR 310
              E+  M+QH      ++    D L  M+   A  HHEK DGSGYP  L G  +  + R
Sbjct: 216 DAEEWEIMQQHASIGAEIIGEHPDPLLQMSRRIALTHHEKWDGSGYPNGLSGTEIPIEGR 275

Query: 311 IIGVADIFTAMAEDRPYRKGQGREGVLRVLRDECTTGRVDGELVETVAESYPDMV 365
           I+ +AD+F A+   RPY+K    E  + +L  E    + D ELV+   +  P++V
Sbjct: 276 IVAIADVFDALTSIRPYKKAWSIEDTMALLESEAGK-QFDPELVDHFKQILPEVV 329



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 8   IAAVLDLPEVLRRRLFVAALLHDVGALSPEEKM-----DLYASKVEECDTHCIRGARLL- 61
           +A    LPE     L+ AA +HD+G +   + +      L A + E    H   GA ++ 
Sbjct: 176 LARQAGLPEPFCELLYNAAPMHDIGKIGTPDAVLKKPAKLDAEEWEIMQQHASIGAEIIG 235

Query: 62  HQVDGFGEEGRVLRLHHATLRDGS 85
              D   +  R + L H    DGS
Sbjct: 236 EHPDPLLQMSRRIALTHHEKWDGS 259