Pairwise Alignments

Query, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 305 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  216 bits (549), Expect = 8e-61
 Identities = 123/319 (38%), Positives = 187/319 (58%), Gaps = 21/319 (6%)

Query: 16  MLRKLAWMVVVFLGITVICFWVIHLAPGSPTDLETTMN-PLAGAEARKRLESIYGLDQPL 74
           +LR+L   + V + ++VI F ++HL+     DL T +  P A +E  +++   YGL++PL
Sbjct: 5   LLRRLGIALCVAITVSVISFSLLHLSG----DLATAIGGPEASSEQIEQIRVQYGLNKPL 60

Query: 75  YVQYAQWLGRLVRLDFGNSMSSDGRPVMERIRERLPLTVGMNVAALFLTLLLAVPIGVAS 134
             QY +WL  +VRLD G+S       V   I  RL +T+G+   AL + LL+A+P+GV +
Sbjct: 61  VTQYFEWLADVVRLDLGDSFFFQ-ESVYNLIASRLSITLGLGAMALSIALLIAIPLGVLA 119

Query: 135 AHWQGGWFDRGMTVLVFIGFAMPGFWLALLLMLFFGIHLGWLPLSGLTSLDYATLSPWGK 194
           A  +  W DR    +  +G AMP FW AL+L++ F + L WLP+SG         S W  
Sbjct: 120 AVKRDTWIDRLALSIAVLGQAMPSFWFALMLIVVFSVTLKWLPVSGN--------STWA- 170

Query: 195 FLDVARHLALPLFIYTFGSLAGMSRFMRSAMLEVLRQDYILTARAKGLPTRTVIFRHALR 254
                 H  +P     + +   + R  R+ ML+VL  DYI TARAKGL   TV+F+HALR
Sbjct: 171 ------HFVMPAIALGYYATPAIMRLTRAGMLDVLNSDYIRTARAKGLRPATVLFKHALR 224

Query: 255 NALLPVITILGLSLPGLIGGSVIIESIFALPGLGQLFYTAVMARDYPLIMGNLVLGAVLT 314
           NAL+PV+ +  +    ++GGSV+IE++F+L G+GQL + A+   D+P++   ++L AV+ 
Sbjct: 225 NALIPVVALAAVEFGFMLGGSVVIETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIY 284

Query: 315 QAGNLIADLCYGLADPRIR 333
               L+AD+   L DPRIR
Sbjct: 285 IVLTLLADVLNALLDPRIR 303