Pairwise Alignments

Query, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  207 bits (526), Expect = 4e-58
 Identities = 123/322 (38%), Positives = 184/322 (57%), Gaps = 14/322 (4%)

Query: 12  LARRMLRKLAWMVVVFLGITVICFWVIHLAPGSPTDLETTMNPLAGAEARKRLESIYGLD 71
           L RR+L  L  +VVV L    I F ++ LAPG P      +     AE   R+ +  GLD
Sbjct: 5   LLRRVLATLPVLVVVAL----IVFLMLRLAPGDPA--AAIVGATGTAEDIARVRADLGLD 58

Query: 72  QPLYVQYAQWLGRLVRLDFGNSMSSDGRPVMERIRERLPLTVGMNVAALFLTLLLAVPIG 131
            P+ VQ+ +W G++++ D G S     + V+  I +R+  T+ ++   L +T+L+AVP+G
Sbjct: 59  DPMPVQFVRWAGQMLQGDLGESFFMK-QTVVALIAQRIEPTLSLSAMTLVMTILIAVPLG 117

Query: 132 VASAHWQGGWFDRGMTVLVFIGFAMPGFWLALLLMLFFGIHLGWLPLSGLTSLDYATLSP 191
           V +A   GGW DR +     +GF++P F +   L+  F +H   LP+ G         S 
Sbjct: 118 VIAAWRHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQMLPVQGYVRFGDDP-SR 176

Query: 192 WGKFLDVARHLALPLFIYTFGSLAGMSRFMRSAMLEVLRQDYILTARAKGLPTRTVIFRH 251
           W       RHL +P    +   +A ++R  R+A+ E + +DYI TARAKG+    V+ RH
Sbjct: 177 W------LRHLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRH 230

Query: 252 ALRNALLPVITILGLSLPGLIGGSVIIESIFALPGLGQLFYTAVMARDYPLIMGNLVLGA 311
           AL NA +P++T++G+ +  LIGG V+ E++FA+PGLGQL   AV++RD+PLI G  +  +
Sbjct: 231 ALANAAVPIVTVIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFS 290

Query: 312 VLTQAGNLIADLCYGLADPRIR 333
           VL    NL  DL Y L DPRIR
Sbjct: 291 VLYMLINLAVDLSYLLFDPRIR 312