Pairwise Alignments

Query, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 466 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  117 bits (294), Expect = 5e-31
 Identities = 113/417 (27%), Positives = 182/417 (43%), Gaps = 59/417 (14%)

Query: 3   RRRMYAILALILCSIAVGVWLYARRGTADPVIRETATVTRGEVRKTLEATGIIKPQVGAV 62
           R   +  L L++ ++A G+W Y    +++     T  V RG +  T+ ATG + P     
Sbjct: 23  RYAKWIALVLVVIAVAFGLWRYF--ASSEQAGYATQKVERGALTVTVSATGKLAPT--NQ 78

Query: 63  VKTGSRFTGIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARVETS 122
           V+ GS  +G+I K+ V V DRV   + +A ID     ++LD+                  
Sbjct: 79  VQVGSELSGLITKVLVDVNDRVTAGQSLALIDP----SRLDDT----------------- 117

Query: 123 YPLQIREAEAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLSNVLVAR 182
               I+++EA V AA+A       T+ + +  V   ++AR  L+  Q+ SR LS   V  
Sbjct: 118 ----IKQSEAAVAAAQA-------TVAQNQATV---IEARAQLNRFQEVSR-LSGGRVPA 162

Query: 183 EATLDRLRNEFRTERKRTRQAAEQA---KAALETARIRLSYAVIRSPISGIVSQVTAPEG 239
           +  +D  R          R +  Q    +AAL + + +   A+IRSP++G+V       G
Sbjct: 163 KTEMDNARAALARAAATLRASQAQVVSQQAALRSNQTQRDKAIIRSPVNGVVLARQVEPG 222

Query: 240 ETVVAGFQVVNLITIL-DPSRLEMWIYVDETDVGQVRPGLDVEFRVDSQPEKTFRGVVDQ 298
           +TV A F    L  I  D S +E+ + +DE DVGQV+ G    F VD+ P +TF   + +
Sbjct: 223 QTVAASFNTPTLFVIAEDLSAMELEVAIDEADVGQVKDGQKANFTVDAFPGETFPAAIRR 282

Query: 299 I--------------YPQPEIRDNIVYYQALVRLDPATSEHLRPEMTTQCRIIVASKKDV 344
           +                       +V Y A + +  A  + LRP MT    I+   K +V
Sbjct: 283 VDVGSNLSAQTSTSSSTSSTTSAQVVSYGATLSVANA-EQKLRPGMTATAEIVTLQKNNV 341

Query: 345 LVIPNDAIKWVDGGRVVFIDDGGKVRRVKPVLGTAGPDVTEVVEGLAEGQKVGVRVE 401
           L++PN A+++           GG    + P  G  G    E    +  G +  V V+
Sbjct: 342 LLVPNAALRFTPTDANAPQAGGGMAGALVPRRGRRGQGGAEKSATIGRGARQTVYVK 398