Pairwise Alignments

Query, 406 a.a., ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 413 a.a., putative ABC transporter, ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  112 bits (279), Expect = 3e-29
 Identities = 98/414 (23%), Positives = 171/414 (41%), Gaps = 30/414 (7%)

Query: 7   ILKSLAAHRTRALLAMLGVFLGALALTAVM------------HVAGAMVLKADLETQKLG 54
           IL ++  ++TR+LL   GVF G   L A++            +  G       L  QK G
Sbjct: 11  ILITITRNKTRSLLTAFGVFWGIFMLVALIGGGQGLQDMMQKNFEGFATNSGFLAAQKTG 70

Query: 55  PNLLQALSGQVRFRRDGPSGVSGVNRTFTLQDAEAILGGVAQVRDGVPYCNAPMPVRYGS 114
               +A  G  + R      +        ++D E I   VA+               YG 
Sbjct: 71  ----EAYKGFRKGRWWDLEAIDIERLRSQVKDVEVITPSVARWGSN---------AIYGD 117

Query: 115 IKTTSQLVATLPGFARVRAYSPAYGRFISDEDEAGRALVCVLGTAIATRLFERPDNAVGR 174
            +    +    P +  + +   AYGRFI+D D      VCV+G  +   LF+  ++  G+
Sbjct: 118 KEYDCSVKGLYPDYLHIESQEMAYGRFINDVDIREARKVCVIGKRVYESLFKPGEDPCGK 177

Query: 175 TVFFFRAPVQVVGVMEEKGQDVSGTNLDEQVYVPLSTYMRRMANQDWISGVYMNLHDGAD 234
            V       QV+G+   +G         E V +P +T  +       I  +   +  G  
Sbjct: 178 YVRVDGIYYQVIGMSSSEGDMNIQGRASEAVTLPFTTMQQTYNLGGQIDVICFTVKRGVK 237

Query: 235 EEAARAAVTAILRSRHLIAAGQKDDFSVLSARDANKLRKEALDLVQTLGVLSSSISFAVG 294
               +  +  I+++ H IA   K     L+A     +       +  L  +    +   G
Sbjct: 238 VSDVQPQMEEIIKAAHYIAPNDKQALMYLNAEAMFSMVDNLFTGIHILIWMVGLGTLLAG 297

Query: 295 SLGILSIMTLLVRARRLEIGVRRAVGASRNVIVRQFLAEAGLMAGVGGTLGVVVALALVT 354
           ++G+ +IM + V+ R  EIG+RRA+GA    I++Q L+E+ ++  + G  G+  A+ ++ 
Sbjct: 298 AIGVSNIMMVTVKERTTEIGIRRAIGARPKDILQQILSESMVLTTIAGMFGISFAVMVLQ 357

Query: 355 VVYA-----VGDFPYTYDPLLAAGACIASVVLGVAAGAYPAWQASRVDVLDVLR 403
           +V        GD  +     LA G C   + LG+ AG  PA++A  +  ++ +R
Sbjct: 358 LVEMGANSNGGDAHFQVSFGLAVGTCALLIALGMLAGLAPAYRAMAIKPIEAIR 411