Pairwise Alignments

Query, 297 a.a., pyruvate formate-lyase activating enzyme, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 52  ENLCTGCGKCVEVCPEGAARIVDGKVIRSIAKCTHCGLCTASCPSKAREMSGRLM 106
           E  C  CG CV+ CP  A R  +GK++     CT C  C   CP   R   G  +
Sbjct: 263 EKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQGVRINKGEFV 317



 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 54  LCTGCGKCVEVCPEGAARIVDGKVIRS--IAKCTHCGLCTASCPSKAR 99
           LCTGCG C  VCP     I +    +S     C  CGLCT  CP  AR
Sbjct: 74  LCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNAR 121



 Score = 44.7 bits (104), Expect = 4e-09
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 28  GCPLRCLWCSNPESQSAVPQMLFFENLCTGCGKCVEVCPEGAARIVDGKVIRS------- 80
           GC  RC  C+      A+      EN C  CG C+  CP+    I + KV+++       
Sbjct: 204 GCT-RCNICNEVCPVDAIEYGQVTEN-CILCGNCISKCPKDVLEISEFKVVKTKEDVKAK 261

Query: 81  -IAKCTHCGLCTASCPSKA-REMSGRLMTVEEVMDVVLKDMLFYENSGGGVTFGGGEPTS 138
               C +CGLC   CPS A R  +G+++   +   +        +    GV    GE   
Sbjct: 262 PEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLC---NTCVKECPQGVRINKGEFVD 318

Query: 139 GGEFFLDL-VKAAHEEGIHV 157
           GG    +L +K   E+ I +
Sbjct: 319 GGCVLCELCIKECPEDAISI 338



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 60 KCVEVCPEGAARIVDGKVIRSIAKCTHCGLCTASCPSKA 98
          KC+EVCP  A +++DGK       C  CG C   CP+ A
Sbjct: 25 KCMEVCPTNAIKMIDGKAF----SCITCGTCAKECPTGA 59



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 55  CTGCGKCVEVCPEGA---ARIVDGKVIRSIAKCTHCGLCTASCPSKARE 100
           C  CGKC+ +CP+     A +VDG        CT C +C   CP  A E
Sbjct: 181 CVECGKCIYLCPKDTIIEAEMVDG--------CTRCNICNEVCPVDAIE 221



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 50  FFENLCTGCGKCVEVCPEGAARIVDGKVIRSIAK--CTHCGLCTASCPSKA 98
           F +  C  C  C++ CPE A  I +     SI K  C  CG C+  CP+ A
Sbjct: 316 FVDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDA 366



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 55  CTGCGKCVEVCPEGAARIVDGKVIRSIAKCTHCGLCTASCPSKA 98
           C  CG C  +CP  A  I  G++  +  KC +C  C   CP++A
Sbjct: 430 CVKCGLCTIICPNDA--IDKGEI--NTEKCEYCSACVNICPTRA 469



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 55 CTGCGKCVEVCPEGAARIVD-GKVIRSIAKCTHCGLCTASCP 95
          C  CG C + CP GA +  + G    +   CT CG+C   CP
Sbjct: 45 CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCP 86



 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 41  SQSAVPQMLFFENLCTGCGKCVEVCPE-------GAARIVD--GKVIRSIAK-CTHCGLC 90
           S + V   + F + C  C KC   CP        G  ++VD     IR+    C  CGLC
Sbjct: 377 SGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLC 436

Query: 91  TASCPSKA 98
           T  CP+ A
Sbjct: 437 TIICPNDA 444



 Score = 31.6 bits (70), Expect = 4e-05
 Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 28  GCPLRCLWCSN--PESQSAVPQMLFFENL----CTGCGKCVEVCPEGAARIV------DG 75
           GC L C  C    PE   ++ +   F ++    C  CG C  VCP  A  +V       G
Sbjct: 320 GCVL-CELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSG 378

Query: 76  KVIRSIA----KCTHCGLCTASCPSKARE-MSGRLMTVEEVMDVVLKD 118
             + S       C  C  C   CP    E  SG    V+     +  D
Sbjct: 379 NKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD 426



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 55  CTGCGKCVEVCPEGAARI 72
           C  C  CV +CP  A RI
Sbjct: 455 CEYCSACVNICPTRAIRI 472