Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 209 a.a., 23S rRNA methyltransferase J (RefSeq) from Shewanella amazonensis SB2B

 Score =  138 bits (347), Expect = 8e-38
 Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 5/194 (2%)

Query: 4   YRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGPRG 63
           + DHY   A++    +R+ +KL+E+  +  + + GM V+DLGAAPG WS  A + VG RG
Sbjct: 18  FDDHYVKLAQKRGLRSRAAFKLEELQEKDHLIKPGMTVVDLGAAPGGWSQVAVKLVGDRG 77

Query: 64  RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIAP--FDVVISDMAPRTTGTRF 121
           +V+ACD+   D +    V F+Q + F        LL+ +     DVV+SDMAP  +G+  
Sbjct: 78  KVIACDILPMDPIV--GVDFLQGD-FREDAVLNALLERVGDEKVDVVLSDMAPNMSGSDG 134

Query: 122 TDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKPKSSR 181
            DQ R++ L   AL +  + L   GSF VK+F G    E ++A+R+ F  VK+ KP SSR
Sbjct: 135 VDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVREAFKVVKTRKPDSSR 194

Query: 182 AESKETFYVCLGYR 195
           A S+E + V  GY+
Sbjct: 195 ARSREVYLVATGYK 208