Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 237 a.a., RlmE family RNA methyltransferase from Rhodopseudomonas palustris CGA009

 Score =  135 bits (341), Expect = 5e-37
 Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 2   KKYRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGP 61
           ++  D Y  +AK++ Y +R+ YKL EID++F++ + GM V+DLGAAPG WS  AA+KVG 
Sbjct: 29  RQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQVAAKKVGA 88

Query: 62  ---RGRVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEI-APFDVVISDMAPRTT 117
              RG+V+A DL E   V    VTF Q +  + S A E L + +    D+V+SDMA  TT
Sbjct: 89  ADGRGKVVAIDLLEMGEV--PGVTFAQLDFLDPS-APERLREMLGGGADIVMSDMAANTT 145

Query: 118 GTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKP 177
           G R TDQ R + L   A   A   L  GG+F+ K+F       L+  +++ +++VK  KP
Sbjct: 146 GHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELKRDYASVKHVKP 205

Query: 178 KSSRAESKETFYVCLGYRGVETSDTD 203
            +SR +S E + +  G+RG    D +
Sbjct: 206 AASRKDSSERYLLATGFRGGAARDAE 231