Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 209 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE from Pantoea sp. MT58

 Score =  129 bits (325), Expect = 3e-35
 Identities = 75/192 (39%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 4   YRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGPRG 63
           + D Y L+A ++   +R+ +KL EI    K+F+ GM V+DLGAAPG WS    +++G +G
Sbjct: 18  FSDKYVLQAHKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIGNKG 77

Query: 64  RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIA--PFDVVISDMAPRTTGTRF 121
           RV+ACD+   D +    V F+Q + F        LL+ +      VV+SDMAP  +GT  
Sbjct: 78  RVIACDILPMDPIV--GVDFLQGD-FREESVINALLERVGDQKVQVVMSDMAPNMSGTPA 134

Query: 122 TDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKPKSSR 181
            D  RS+ L   AL +    L  GGSFVVK+F G    E ++ +R  F+ VK  KP +SR
Sbjct: 135 VDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLREIRSLFTKVKIRKPDASR 194

Query: 182 AESKETFYVCLG 193
           + S+E + V  G
Sbjct: 195 SRSREVYIVATG 206