Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 215 a.a., 23S rRNA methyltransferase from Herbaspirillum seropedicae SmR1

 Score =  104 bits (259), Expect = 1e-27
 Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 6   DHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSW------SLGAAEKV 59
           D Y   A++E Y AR+ YKLKEID   ++ + G  ++DLG  PGSW       L  AE  
Sbjct: 17  DPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYVRNKLAGAEGG 76

Query: 60  GPRGRVLACDLQETDTVFPDNVTFMQENVFERSEA--FENLLDEIAPFDVVISDMAPRTT 117
           G  G ++  D+   D +   +V ++Q +  E       E +LD     D+V+SDMAP  +
Sbjct: 77  GIHGTIIGLDILPMDPIA--DVHYIQGDFREDEPVRQLEAVLDG-RKADLVLSDMAPNLS 133

Query: 118 GTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKP 177
           G    D AR   L   A+  A   +  GGS +VK F G    ELV   R  F  V S KP
Sbjct: 134 GVAIADAARVEYLIDLAIDFAQLHMKPGGSLLVKCFNGTGYNELVHKFRAEFKTVMSKKP 193

Query: 178 KSSRAESKETF 188
           K+SR +S E F
Sbjct: 194 KASRDKSSEIF 204