Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 257 a.a., ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  119 bits (299), Expect = 4e-32
 Identities = 76/208 (36%), Positives = 113/208 (54%), Gaps = 18/208 (8%)

Query: 2   KKYRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGP 61
           ++  D Y  KAK+E Y  R+ +K+ EID RF+    G +V+DLG APG W   A  +V  
Sbjct: 49  RQLNDPYVQKAKREGYRGRAAFKILEIDERFRFLVPGARVVDLGCAPGGWCQVAVRRVNA 108

Query: 62  --------RGRVLACDLQETDTVFPDNVT----FMQENVFERSEAFENLLDEIAPFDVVI 109
                   +GRVL  DL+E D V P   T    FM++    + +A+          DVV+
Sbjct: 109 LGEKSGKAQGRVLGVDLKEIDPV-PGAETHVLDFMEDGADAQVKAWLG-----GKADVVM 162

Query: 110 SDMAPRTTGTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRF 169
           SDMA  ++G + TD  R + LC  A  +A   L +GG+FV K+  G   +EL   +++ F
Sbjct: 163 SDMAAASSGHKQTDHLRIVALCEAAAHLAFDVLEEGGTFVAKVLAGGAERELQTLLKRAF 222

Query: 170 SAVKSFKPKSSRAESKETFYVCLGYRGV 197
           + V + KP +SR++S E F V  G+RG+
Sbjct: 223 TKVINVKPDASRSDSSEKFVVATGFRGL 250