Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

 Score =  642 bits (1656), Expect = 0.0
 Identities = 351/723 (48%), Positives = 465/723 (64%), Gaps = 19/723 (2%)

Query: 8   DSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERL 67
           DS+  R+A +LG+   Q +AA+ L DEG T+PF+ARYRKE TG LD+  L  L +    L
Sbjct: 2   DSINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRYL 61

Query: 68  RTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGL 127
           R LD+RR +I+AS+ E+ +LTP+L + +  A T T LED+YLP++ KR T+   A E GL
Sbjct: 62  RELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAGL 121

Query: 128 APLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDI 187
             LA+ L         Q A  F+D  KG  D  A L GA+ I+ E  +ED    A LRD 
Sbjct: 122 GELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRDF 181

Query: 188 FVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDD 247
               ATL ++V  GKE + A + D+F+  E     P+HR LA+FRG  E +L V ++  D
Sbjct: 182 LKHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVGD 241

Query: 248 DIAVGALH--------RRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALRE 299
           +   G++H        R  +  R  +A     EV       W   L   LE +    LR+
Sbjct: 242 ETP-GSMHPGEGMIGERFGIANRGRAADKWLGEVVRW---TWKVKLYTHLETDLLGELRD 297

Query: 300 RAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLT 359
           +AE +AI VFA NL +LLLA P GPR TLALDPG RTG K+  +DA G LL    ++P  
Sbjct: 298 KAEDDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHA 357

Query: 360 GGDRATRAAATLRELCTRHGIEAVAVGNGTAGRET-----EAFVKSAGLPPHVTVALVDE 414
             +      A L +LC +H ++ +A+GNGTA RE+     E   K  GL   +T  +V E
Sbjct: 358 PRNDWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLK--LTKIMVSE 415

Query: 415 RGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQN 474
            GASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK+DP+S+GVGQYQHDV Q 
Sbjct: 416 AGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQL 475

Query: 475 ALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLL 534
            L R+L+ VV  CVNAVGVDVNTAS  LLA +SG+   LA+ IV  R  NG F++R +L 
Sbjct: 476 KLARSLDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELK 535

Query: 535 KVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRR 594
           KVPRLG K FEQAAGFLRV  G  PLDASAVHPE+Y +V+R+A+DTG  +  L+ D+   
Sbjct: 536 KVPRLGEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFL 595

Query: 595 EALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGI 654
           + L  +++ D+  GL T+ DI+ EL +PGRDPRP F+   F EGV K+ D++PGM L G+
Sbjct: 596 KRLDPKQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGV 655

Query: 655 VTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINL 714
           VTNVT FGAFVDIGVH+DGLVH+S L+++FV+DP EVV  G  V+V+V++VD  R+R+ L
Sbjct: 656 VTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGL 715

Query: 715 TLK 717
           +++
Sbjct: 716 SMR 718