Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 787 a.a., Transcription accessory protein (S1 RNA-binding domain) from Xanthomonas campestris pv. campestris strain 8004

 Score =  644 bits (1662), Expect = 0.0
 Identities = 354/722 (49%), Positives = 463/722 (64%), Gaps = 7/722 (0%)

Query: 1   MTETIPHDSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTAL 60
           M +T     +A  +A ++G   AQA AA+ L DEG ++PF+ARYRKE TGGLD+  L  L
Sbjct: 1   MHDTQLAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNL 60

Query: 61  RDGCERLRTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAA 120
                 LR L+ RR AI++S+ E+ +L+ +L   + AA T + LED+YLP++PKR TRA 
Sbjct: 61  ETRLTYLRELEDRRAAILSSIGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQ 120

Query: 121 KARERGLAPLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRAT 180
            ARE GL PLA+ LL          AA +VD  KGV D  AAL GAR I+ E   ED A 
Sbjct: 121 IAREAGLEPLADTLLADPTQAPDTTAAIYVDADKGVADVKAALEGARAILMERWGEDAAL 180

Query: 181 RATLRDIFVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLD 240
              LR        +R++VA GKEE  A YRD+FD +E  A  P+HRLLA+FR  REE L 
Sbjct: 181 VGELRSWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLY 240

Query: 241 VRVRPDDDIAVGALHRRWLKGRASSAGTDAAEVATALTDA----WNRLLAPSLENEFRTA 296
           + + P  D   G  +      R++    +       L DA    W   L   L  +    
Sbjct: 241 LDLDPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQ 300

Query: 297 LRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIH 356
            RE+AEAEAIAVF  NL++L+LA P GPR  L LDPG RTG K+  +DA G L+  E I+
Sbjct: 301 AREKAEAEAIAVFGDNLKDLMLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIY 360

Query: 357 PLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGL---PPHVTVALVD 413
           P     +  ++  TL++LC +H +E +A+GNGTA RET+     A        +   +V 
Sbjct: 361 PHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDKLAGEAIALCDRAKLQKIVVS 420

Query: 414 ERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQ 473
           E GASVYSASE A  EFP+ DV++RGA+SI RRL DPLAELVK++P+++GVGQYQHDVDQ
Sbjct: 421 EAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQ 480

Query: 474 NALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDL 533
             L +AL+  V  CVNAVGV VNTAS  LL+ VSG+   +A+ IV  R  NGPF+ R+DL
Sbjct: 481 YRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDL 540

Query: 534 LKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATR 593
           LKVPRLG K FEQ AGFLR+  G EPLD SAVHPE+Y VV R+   TG  +  L+ D + 
Sbjct: 541 LKVPRLGDKTFEQCAGFLRIADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSF 600

Query: 594 REALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPG 653
             AL+ E++ D++ G+PT+RDI+ E+ +PGRDPRP F+   FAEG+  +  ++PGM L G
Sbjct: 601 LRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMILEG 660

Query: 654 IVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERIN 713
           +V+NV  FGAFVDIGVH+DGLVH+S L+D FV+DP +VV  G  V+V+VL+VD  R+RI 
Sbjct: 661 VVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIA 720

Query: 714 LT 715
           LT
Sbjct: 721 LT 722