Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

 Score =  626 bits (1615), Expect = 0.0
 Identities = 342/727 (47%), Positives = 462/727 (63%), Gaps = 28/727 (3%)

Query: 9   SVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLR 68
           ++ H++A +L +   Q  AA+ L D+G T+PF+ARYRKE TGGLD+  L  L      LR
Sbjct: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63

Query: 69  TLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLA 128
            +D RR  I+ S+ E+ +LTP+L +A+ +A +   LED+YLP++PKR T+   A E GL 
Sbjct: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123

Query: 129 PLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIF 188
           PLA+ L  Q        AA +++  KGV D+ AAL GAR I+ E ++ED      +R   
Sbjct: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183

Query: 189 VRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDDD 248
            R A + S+V  GKE+    ++D+FD  E  + AP+HR LAM RG  E  L + +  D +
Sbjct: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243

Query: 249 IAVGALHRRWLKGRASSAGTDAAE-----VATALTDAWNRL---------LAPSLENEFR 294
           +   A        R S   T  AE     ++ A  DAW +          ++  +E E  
Sbjct: 244 LEESA--------RQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELM 295

Query: 295 TALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEV 354
           +A++ERAE EAI VFA NL++LL+A P GPR TL LDPG RTG K+  +DA G +L  + 
Sbjct: 296 SAMKERAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDT 355

Query: 355 IHPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAF----VKSAGLPPHVTVA 410
           I+P     +  RA  ++  L  +  ++ +A+GNGTA RET+AF    +K   L   V   
Sbjct: 356 IYPHAPQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGNLK--VQKI 413

Query: 411 LVDERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHD 470
           +V E GASVYSASE+A  EFP+ DV++RGA+SI RRL DPLAELVK+DP+S+GVGQYQHD
Sbjct: 414 MVSEAGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHD 473

Query: 471 VDQNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTR 530
           V Q  L + L+ +V  CVNAVGVDVNTAS  LL  V+G+  ALA+ IV  R  NG F +R
Sbjct: 474 VSQTLLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESR 533

Query: 531 RDLLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRD 590
             L KVPRLGPKAFEQ AGFLR+  G  PLDASAVHPE+Y VV+ +AE     +  L+ +
Sbjct: 534 SALKKVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGN 593

Query: 591 ATRREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGME 650
                 LR   Y D+  G+PT+ DI+ EL +PGRDPRP F+   FAEG+++V D++ GM 
Sbjct: 594 TEFLRTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMV 653

Query: 651 LPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRE 710
           L G+V+NV  FGAFVDIGVH+DGLVH+S L DRF+ DP EVV  G  V+V+V++VD QR+
Sbjct: 654 LEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRK 713

Query: 711 RINLTLK 717
           RI L+++
Sbjct: 714 RIALSMR 720