Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 772 a.a., RNA binding S1 from Pseudomonas syringae pv. syringae B728a

 Score =  627 bits (1616), Expect = 0.0
 Identities = 345/721 (47%), Positives = 462/721 (64%), Gaps = 15/721 (2%)

Query: 8   DSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERL 67
           DS+  R+A +LG+   Q +AA+ L DEG T+PF++RYRKE TG LD+  L  L +    L
Sbjct: 2   DSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRYL 61

Query: 68  RTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGL 127
           R LD+RR +I+AS+ E+ +LTP+LA+ +  A T T LED+YLP++ KR T+   A E GL
Sbjct: 62  RELDERRVSILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGL 121

Query: 128 APLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDI 187
             LA+ L           AA FVD  KGV D  AAL GA+ I+ E  +ED +    LR  
Sbjct: 122 GELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGAKYILMERFAEDASLLDKLRSF 181

Query: 188 FVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDD 247
             + A + ++V  GKEE+ A +RD+F+  E   + P+HR LA+FRG  E  L   ++  +
Sbjct: 182 LKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVGE 241

Query: 248 DIAVGALH--------RRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALRE 299
           ++  GA+H        R  ++ +   A    AEV       W   L   LE +    LR+
Sbjct: 242 ELP-GAMHPCELMIGERFGIQNQNRPADKWLAEVVRW---TWKVKLYSHLETDLLGELRD 297

Query: 300 RAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLT 359
            AE EAI VFA NL +LLLA P G R TL LDPG RTG K+  +DA G LL +  ++P  
Sbjct: 298 GAETEAINVFAHNLHDLLLAAPAGQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHV 357

Query: 360 GGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSA--GLPP-HVTVALVDERG 416
             ++  +  A L  LC +H ++ +A+GNGTA RET+          P   +T  +V E G
Sbjct: 358 PKNQWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLIKKYPDLKMTKVMVSEAG 417

Query: 417 ASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNAL 476
           ASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK+DP+S+GVGQYQHDV Q  L
Sbjct: 418 ASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKL 477

Query: 477 RRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLKV 536
            R L+ VV  CVNAVGVDVNTAS  LLA +SG+   LA+ IVA R  NG F+TR  L KV
Sbjct: 478 ARGLDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKV 537

Query: 537 PRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRREA 596
            RLG K FEQAAGFLRV  G  PLDASAVHPE+Y +V+R+A +T   +  L+ DA+  + 
Sbjct: 538 SRLGEKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKR 597

Query: 597 LRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVT 656
           L  +++ D+  GLPT+ DI+ EL +PGRDPRP F+   F +GV  + D+Q GM L G+VT
Sbjct: 598 LDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVT 657

Query: 657 NVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTL 716
           NVT FGAFVDIGVH+DGLVH+S L+++F++DP E V  G  V+V+V++VD  R+R+ L++
Sbjct: 658 NVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSM 717

Query: 717 K 717
           +
Sbjct: 718 R 718