Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 768 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  634 bits (1636), Expect = 0.0
 Identities = 353/714 (49%), Positives = 458/714 (64%), Gaps = 8/714 (1%)

Query: 10  VAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLRT 69
           +A  +A+++  T AQ +AA++L D G T+PF+ARYRKE TGGLD+  L  L +    LR 
Sbjct: 8   IAAIIASEIKATAAQVAAAVELLDGGATVPFIARYRKEVTGGLDDTQLRVLSERLTYLRE 67

Query: 70  LDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLAP 129
           L+ RR +I+ S+  + ++T +L   +  A T   LEDIYLP++PKR T+A  ARERGL  
Sbjct: 68  LEARRASIVDSIRSQGKMTDELEGKIAGAVTKAELEDIYLPYKPKRRTKAEIARERGLGA 127

Query: 130 LAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIFV 189
           LAE +L  R     + AA F+     VPD   AL GARDIIAE +SE+      LR+   
Sbjct: 128 LAEAILSDRSVAPAERAAAFL--TADVPDVKTALDGARDIIAEAMSENADLLGRLRNHMR 185

Query: 190 RRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDDDI 249
             A LR++V  GK+E  A + D+FD SE  A    HR LAM RG  EE+L V +  D + 
Sbjct: 186 EVAFLRARVVDGKQESGAKFSDYFDHSERWATVAGHRALAMLRGWNEEVLSVDIVVDQEA 245

Query: 250 AVGALHRRWLKGRASSAGTDAAE---VATALTDAWNRLLAPSLENEFRTALRERAEAEAI 306
           +        +   A + G        +   +   W   L+ SL  +    LRERAE EAI
Sbjct: 246 SPSLRPTERMIAAAYNVGDRLPADRWLLEVIGWTWRVKLSLSLSLDLMRELRERAEEEAI 305

Query: 307 AVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLTGGDRATR 366
            VFA NL++LLLA P G R T+ LDPG RTG K+  +D  G LL    ++P    +    
Sbjct: 306 RVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLLDTATVYPFPPKNDIRG 365

Query: 367 AAATLRELCTRHGIEAVAVGNGTAGRETEAFVKS--AGLP-PHVTVALVDERGASVYSAS 423
             A L  L  +H +E +A+GNGT  RETE  V    A +P P  T  +V E GASVYSAS
Sbjct: 366 TQAELAALVRKHKVELIAIGNGTGSRETEKLVADMLAAMPAPKPTKVIVSEAGASVYSAS 425

Query: 424 EVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNALRRALEEV 483
           E A AEFP  DV++RGA+SI RRL DPLAELVK++P+S+GVGQYQHDVDQ+ L R+L+ V
Sbjct: 426 ETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSRSLDAV 485

Query: 484 VASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLKVPRLGPKA 543
           V   VNAVGVD+NTAS  LLA VSG+G + A+ IVA R   G F +R++LLKVPRLG + 
Sbjct: 486 VEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDAMGAFASRKELLKVPRLGART 545

Query: 544 FEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRREALRLERYV 603
           FEQ AGFLR+  G EPLDASAVHPE+Y V +++    G  V  LM D+   + L    +V
Sbjct: 546 FEQCAGFLRIPNGSEPLDASAVHPEAYGVAKKIVAACGRDVRSLMADSAELKKLDPRIFV 605

Query: 604 DDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVTNVTKFGA 663
           D+R GLPT++DI++EL +PGRDPRP+F+   FAEGV+ + D++ GM L G VTNV  FGA
Sbjct: 606 DERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGVDDIKDLKVGMRLEGTVTNVAAFGA 665

Query: 664 FVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717
           FVDIGVH+DGLVHVSQLADRFV+DP EVV  G  V+VRV +VD  R+RI L+++
Sbjct: 666 FVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVQVRVTEVDVARKRIGLSMR 719