Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 763 a.a., RNA-binding transcriptional accessory protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  761 bits (1964), Expect = 0.0
 Identities = 382/704 (54%), Positives = 514/704 (73%), Gaps = 5/704 (0%)

Query: 14  LAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLRTLDKR 73
           +AA+L +   Q +A + L DEG T+PF++RYRKEATG LDEV + A+RD   +LR LDKR
Sbjct: 8   IAAELKVAEKQVTATINLLDEGATVPFISRYRKEATGSLDEVEVAAIRDRVLQLRDLDKR 67

Query: 74  RDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLAPLAER 133
           R+AI+ SMTE  +LTP+L K ++ A T++ LEDIYLPF+PKR TRA+ A+E+GL PLA +
Sbjct: 68  REAILKSMTELGKLTPELEKKINEAETISLLEDIYLPFKPKRKTRASVAKEKGLEPLALQ 127

Query: 134 LLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIFVRRAT 193
           + EQ        A  F+D  KGV     ALAGARDIIAE +SE+   R  +R  F  +A+
Sbjct: 128 IFEQHAFDLEASADKFIDAEKGVNSLDEALAGARDIIAEMISENVEARTKMRTYFQEKAS 187

Query: 194 LRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDDDIAVGA 253
            +S+V +GKEE+   Y+D+F+ +E    A +HR+LAM RGE+E +L +   P  + A+  
Sbjct: 188 FKSEVIKGKEEEGIKYKDYFEWNEPVKTAASHRVLAMRRGEKELILRLDALPPAEDAIAI 247

Query: 254 LHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALRERAEAEAIAVFAANL 313
           L  +++ G  +++     +V  AL D + RLL P++E E R   +++A+ EAI VFA N 
Sbjct: 248 LENQFILGNNAAS----KQVQQALEDGYKRLLEPAMETELRVFTKQKADEEAIRVFAENA 303

Query: 314 RELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLTGGDRATRAAATLRE 373
           R+LLLA PMG +  LA+DPG+RTG K+VCLD QG LL +  I+P TG      A  T+++
Sbjct: 304 RQLLLAAPMGQKNVLAIDPGFRTGCKVVCLDKQGQLLENTAIYPHTGQGNVKNAEFTIQQ 363

Query: 374 LCTRHGIEAVAVGNGTAGRETEAFVKSAGLPPHVTVALVDERGASVYSASEVARAEFPDH 433
           LC +H +EA+A+GNGTAGRETEAFV++  LP H+T+ +V+E GAS+YSASEVAR EFP  
Sbjct: 364 LCEKHNVEAIAIGNGTAGRETEAFVRALNLP-HITIVMVNESGASIYSASEVAREEFPTQ 422

Query: 434 DVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNALRRALEEVVASCVNAVGV 493
           D+TVRGA+SIGRRLMDPLAELVK+DP+S+GVGQYQHDVDQN L+ +L++ V S VNAVGV
Sbjct: 423 DITVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVDQNKLQASLDDTVISAVNAVGV 482

Query: 494 DVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLKVPRLGPKAFEQAAGFLRV 553
           ++NTAS ++LAYVSG+GP LA+ IV  R  +G F+ R  L KVPRLG KA+EQAAGFLR+
Sbjct: 483 ELNTASKQILAYVSGLGPTLAQNIVDYRNTHGAFKNRESLKKVPRLGDKAYEQAAGFLRI 542

Query: 554 HGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRREALRLERYVDDRVGLPTLR 613
                 LD S VHPE YAVV +MA+D G +V  LM+D   ++ ++ ++YV D +GLPTL 
Sbjct: 543 RNAENVLDTSGVHPERYAVVDKMAKDLGTTVSALMKDTQLQKQIKPQQYVTDEIGLPTLT 602

Query: 614 DIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDG 673
           DI+ ELA+PGRDPR  FE F+F +GVN++ D++ GM+LPGIVTN+T FGAFVDIGVH+DG
Sbjct: 603 DILKELAKPGRDPREQFEAFSFTDGVNEISDLRVGMKLPGIVTNITNFGAFVDIGVHQDG 662

Query: 674 LVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717
           LVH SQLA+RFV +P +VV   +KV V V++VD  R+RI+L++K
Sbjct: 663 LVHTSQLANRFVANPNDVVKVHQKVEVTVMEVDAARKRISLSMK 706