Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 787 a.a., RNA-binding S1 domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  608 bits (1567), Expect = e-178
 Identities = 331/719 (46%), Positives = 455/719 (63%), Gaps = 10/719 (1%)

Query: 9   SVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLR 68
           ++A  +A +L +   Q +A + L D+G T+PFVARYRKE TGGLD+  L  L      LR
Sbjct: 3   NIAKIIAQELNVREQQVTATITLLDDGATVPFVARYRKEVTGGLDDTQLRTLYSRLGYLR 62

Query: 69  TLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLA 128
            L+ RR  I++S+  + +LT +L  A+  A + T LED+YLP++PKR T+   A E G+ 
Sbjct: 63  ELNDRRQVILSSIQAQGKLTAELQAAIDQADSKTRLEDLYLPYKPKRRTKGQIAIEAGIE 122

Query: 129 PLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIF 188
           PL +RLL  R A    LA+ +++   G+ +  A L GAR I+ E  +ED      +R   
Sbjct: 123 PLVDRLLSDRQADIEALASEYLNAEAGLDEVKAVLDGARFILMERFAEDAELLQKVRQHL 182

Query: 189 VRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVR--PD 246
            + A L S V +GKE++ A +RD+F+ SE     P+HR LAM RG  E +L + +   PD
Sbjct: 183 TQIAVLESHVVKGKEKEGAKFRDYFEHSEKLMNVPSHRALAMLRGRNEGVLSLSMNADPD 242

Query: 247 DDIAVGALHRRWLKGRASSAGTDAAE---VATALTDAWNRLLAPSLENEFRTALRERAEA 303
            +   G+     +    +   +D+A    +   +T  W   +A  +E EF   LRERAE 
Sbjct: 243 SEAKSGSYCEVIIADHFNLKLSDSAVDQWLKLVVTSTWRIKIALQMETEFIAKLRERAET 302

Query: 304 EAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLTGGDR 363
           EAI VFA NL +LL+A P G + TL LDPG RTG K+  ++  G L+ H  I P    ++
Sbjct: 303 EAINVFARNLGDLLMAAPAGAKATLGLDPGLRTGVKVAIVNNTGKLMAHTTIFPHAPQNQ 362

Query: 364 ATRAAATLRELCTRHGIEAVAVGNGTAGRET-----EAFVKSAGLPPHVTVALVDERGAS 418
             ++  TL  L   H +E +A+GNGTA RET     E   +     P +T  +V E GAS
Sbjct: 363 WDKSIRTLANLVKMHKVELIAIGNGTASRETDKLAGELIAELKSELPTLTKIMVSEAGAS 422

Query: 419 VYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNALRR 478
           VYSASE+A  EFP+ DV++RGA+SI RRL DPLAELVK++P+S+GVGQYQHDV Q+ L +
Sbjct: 423 VYSASELAAEEFPELDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSQ 482

Query: 479 ALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLKVPR 538
           +LE VV  CVN VGVD+N AS  LL  V+G+   LA+ IV  R  NG F +R+ LLKVPR
Sbjct: 483 SLEAVVEDCVNGVGVDLNMASMPLLTQVAGLNKTLARNIVEYRDQNGQFTSRKQLLKVPR 542

Query: 539 LGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRREALR 598
           LGPKAFEQAAGFLR+  G  PLDASAVHPE+YA+V  +A+    +V  L+ +    + + 
Sbjct: 543 LGPKAFEQAAGFLRIREGDNPLDASAVHPETYALVESIAKAQQQAVDALIGNTDLLKQID 602

Query: 599 LERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVTNV 658
            + +V +  GLPT+ DI+SEL +PGRDPR  F+   F EGV ++ D++  M L G+VTNV
Sbjct: 603 AKAFVTEEFGLPTIEDILSELDKPGRDPRGEFKTAVFKEGVEEIKDLKVEMILEGVVTNV 662

Query: 659 TKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717
           T FGAFVDIGVH+DGLVH+S L D+FV DP  VV  G  V+V+V++VD +R+RI+LT++
Sbjct: 663 TNFGAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEVDAERKRISLTMR 721