Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 782 a.a., RNA-binding protein from Burkholderia phytofirmans PsJN

 Score =  624 bits (1608), Expect = 0.0
 Identities = 349/727 (48%), Positives = 455/727 (62%), Gaps = 12/727 (1%)

Query: 1   MTETIPHDSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTAL 60
           MTET+    +  R+AA+L +   Q +AA++L DEG T+PF+ARYRKE T  LD+  L  L
Sbjct: 1   MTETVAL-KIVQRIAAELSVQPRQVAAAVQLLDEGATVPFIARYRKEVTDNLDDTQLRNL 59

Query: 61  RDGCERLRTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAA 120
            +    LR L+ RR AIIAS+ E+ +LT +L  A+  A +   LED+YLP++PKR TRA 
Sbjct: 60  EERLLYLRELEDRRAAIIASIDEQGKLTDELRTAIEGADSKQVLEDLYLPYKPKRRTRAQ 119

Query: 121 KARERGLAPLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRAT 180
            ARE GL PLA+ LL          AA +VD  KGV D  AAL GARDI++E   E    
Sbjct: 120 IAREAGLQPLADALLANPLLDPQTEAAAYVDAEKGVADLKAALDGARDILSEQFGETAEL 179

Query: 181 RATLRDIFVRRATLRSKVARGKEE-QAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELL 239
              LRD    +  + SKV  GKE  +   +RD++D SE     P+HR LA+FRG    +L
Sbjct: 180 LGKLRDYLFNQGVVSSKVVEGKENAEEEKFRDYYDYSETIRTVPSHRALALFRGRNAGVL 239

Query: 240 DVRVRPDDDIAVGALHR-RWLKGRASSAGTDAAEVATALTDA----WNRLLAPSLENEFR 294
            V++   +++     H    L  R              L+D     W   + P +ENE  
Sbjct: 240 MVKLGLGEELDAQVPHPGEALIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELL 299

Query: 295 TALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEV 354
           T LR+ AE EAI VFA NL++LLLA P GP+  + LDPG RTG K+  +D  G +L  +V
Sbjct: 300 TNLRDEAEHEAIRVFARNLKDLLLAAPAGPKAVIGLDPGMRTGVKVAVVDRTGKVLATDV 359

Query: 355 IHPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGLPPHVTVAL--- 411
           I+P         + A L  +C +   E +++GNGTA RET+       +  H    L   
Sbjct: 360 IYPHEPRRDWDGSIAKLARICAQTQAELISIGNGTASRETDKLASEL-IARHPEFKLQKI 418

Query: 412 -VDERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHD 470
            V E GASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK++P+++GVGQYQHD
Sbjct: 419 VVSEAGASVYSASELAAKEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHD 478

Query: 471 VDQNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTR 530
           V+Q  L R+L+ VV  CVNAVGVD NTAS  LLA VSG+   LA+ IV  R  NGPF +R
Sbjct: 479 VNQRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSR 538

Query: 531 RDLLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRD 590
             L KVPRLG K FEQAAGFLR++ G  PLD S+VHPE+Y VV RM       V +++ +
Sbjct: 539 EHLRKVPRLGDKTFEQAAGFLRINNGENPLDRSSVHPEAYPVVERMLAKISKHVGEVLGN 598

Query: 591 ATRREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGME 650
                 L    +VDDR GLPT+RDI+ EL +PGRDPRP F+   F EGV KV D+ PGM 
Sbjct: 599 RDALRGLSPAEFVDDRFGLPTVRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMV 658

Query: 651 LPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRE 710
           L G+VTNV  FGAF+DIGVH+DGLVHVS ++ +F++DP EVV  G+ V+V+VL+VD +R+
Sbjct: 659 LEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVKRQ 718

Query: 711 RINLTLK 717
           RI LT++
Sbjct: 719 RIALTMR 725