Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 416 a.a., type II and III secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (538), Expect = 3e-59
 Identities = 145/431 (33%), Positives = 217/431 (50%), Gaps = 56/431 (12%)

Query: 26  SCAALTVPTFCGAASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGK 85
           SCA L       A  + +++  G    V ++ P+ R+A+ D  IA V V       +TG 
Sbjct: 32  SCAGLA------AMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGV 85

Query: 86  KAGTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTV 145
             GTT+L +W    +                        P ++ + V G           
Sbjct: 86  AQGTTSLMVWTACASA-----------------------PRQSMVFVRG----------- 111

Query: 146 RSAASMTTAMDMARLYAPDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRG 205
                 TTAM +  + AP     L       QV  +++  E+ R  ++     +      
Sbjct: 112 ----RATTAM-VESVTAPSADAQLPS-----QVQTDIRFIEVSRTKLKEASTSIFGKGSS 161

Query: 206 DFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVK 265
           +F+FG    +  ++   G V  G + ++   N N       G   ++G ++ ++ +G   
Sbjct: 162 NFLFGAPGTVPGVNVTPGAV-GGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAY 220

Query: 266 VLAEPTLVCRSGEKAEFLAGGEIPIPVPQGLGT-VAIEYKEFGVTLQFLPTVVGDGRISM 324
            LA P+LV  +G+ A FLAGGE P+PVP G G  ++IEYKEFGV L   PTVVG  RI +
Sbjct: 221 TLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILL 280

Query: 325 KVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYP 384
           KVAPEVSELD++  + I G T+PA+  RR  T++ LADG+SF ++GL+      +V+K+P
Sbjct: 281 KVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFP 340

Query: 385 VLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANA--TRLPTDAYR--EPSAFEY 440
            LGD+P+LG  FRSS  Q++E EL++IVTPHL +PL ANA    LP +A R  +PS    
Sbjct: 341 GLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRL 400

Query: 441 FILGRMEGSRR 451
           + L   +  RR
Sbjct: 401 YFLENGDFDRR 411