Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 511 a.a., pilus assembly transmembrane protein from Sinorhizobium meliloti 1021

 Score =  223 bits (568), Expect = 1e-62
 Identities = 154/496 (31%), Positives = 252/496 (50%), Gaps = 64/496 (12%)

Query: 18  TLLCTIALSCAALTVPTFCGAASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSP 77
           TL    A S + + +      A   + +   K+ VV        + +AD ++A  +  + 
Sbjct: 29  TLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAITRTS 88

Query: 78  QQVYVTGKKAGTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVND 137
           +++Y+ GK  G T + ++  GG  I   +V V  D+A L+  L R +P + DI V  ++D
Sbjct: 89  RRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGLEANLRRFIP-DADINVEIISD 147

Query: 138 TVTLAGTVRSAASMTTAMDMAR-----------------------LYAPDK----VTNLM 170
            V L GTVR+    T A+D+AR                       ++A D+    + NL+
Sbjct: 148 NVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFAEDRQNSQIVNLL 207

Query: 171 QVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIFGMLNQLFTLDSQKGVVDAGPS 230
            + G  QV L+V VAE+ R V+++LG +           G ++     D + G+    P+
Sbjct: 208 TIEGDDQVTLKVTVAEVSRQVLKQLGFN-----------GRVS-----DGESGISFRNPA 251

Query: 231 --GAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEI 288
             G  ++   N   + + G  +I  +++ ++Q G+++ LAEP+L   SG++A+F  GGE 
Sbjct: 252 NLGDAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYVGGEF 311

Query: 289 PIPVPQGLGT------VAIEYK----EFGVTLQFLPTVVGDGRISMKVAPEVSELDY--- 335
            +   Q + T        +E +    E+G+ L F P V+G GRIS+++  +VSE  Y   
Sbjct: 312 RLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGS 371

Query: 336 ----TNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPV 391
                ++  I G T   I  R AST+VEL  G S  IAGL++D++RQA++  P    +P+
Sbjct: 372 VVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPGASKIPI 431

Query: 392 LGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEYFILGRMEG-SR 450
           LGTLFRS ++Q++ETELVII TP+L +P+  +A   P D +   +  E F LGR+     
Sbjct: 432 LGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGRVNRIYG 491

Query: 451 RADATAAAARTYGTTG 466
           R +A   A R +G  G
Sbjct: 492 RPEAQPPAGRYHGNVG 507