Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 423 a.a., putative type II and III secretion system outermembrane protein, secretin (RefSeq) from Shewanella amazonensis SB2B

 Score =  156 bits (395), Expect = 1e-42
 Identities = 116/377 (30%), Positives = 191/377 (50%), Gaps = 23/377 (6%)

Query: 59  VGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDGGGAVIGVYDVQVTPDIAQLKE 118
           V R+ + +  +    VL  + V + G+  G + + LW   G V  +  V VT + AQ   
Sbjct: 29  VERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGTVRKL-SVVVTKENAQTTV 87

Query: 119 -MLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDMARLYAPDKVTNLMQVGGVHQ 177
             + R+L     I V   +  + + G   + AS    ++   L   D +  L++     +
Sbjct: 88  GTMKRMLAEFPSIEVTESDGVIVIHG--EADASQRETLEKV-LDGKDNILPLIKYVKYGK 144

Query: 178 -----VMLEVKVAEMRRNVMERLGIDLTYAWRGDFIFGMLNQLFTLDSQKGVVDAGPSGA 232
                V +EVK+ E  ++ +  +G+       G   FG   + FT +    V   G    
Sbjct: 145 SIEPMVKMEVKIVEFNKSTLNNIGVQWENVMSGP-AFGAA-KAFTANPIFSVSSPGQYAN 202

Query: 233 VLSPNVNGAFRITS-------GQVSIMGF-LDVLKQNGLVKVLAEPTLVCRSGEKAEFLA 284
            +   V+ A  +         G V+ +G  + +L + G  ++LAEP L  RSGE A FLA
Sbjct: 203 SIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKGDARMLAEPNLTTRSGEAASFLA 262

Query: 285 GGEIPIPVPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYTNVVQIQGF 344
           GGEIPI    G+G+V I+YKE+G+ L   P V  D  I  +V  EVS +D +  +Q++G 
Sbjct: 263 GGEIPIRTVSGVGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVDPS--IQLEG- 319

Query: 345 TIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLFRSSNWQKN 404
           + P   +RR  + + + + Q+  I+GL+  ++ + VNK+P+LGD+P+LG LF+S N+++ 
Sbjct: 320 SAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELFKSRNFREE 379

Query: 405 ETELVIIVTPHLAKPLE 421
           +TELVI VTP +  P E
Sbjct: 380 KTELVIFVTPTVVYPGE 396