Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 480 a.a., type II and III secretion system protein family protein from Rhodopseudomonas palustris CGA009

 Score =  246 bits (628), Expect = 1e-69
 Identities = 155/442 (35%), Positives = 238/442 (53%), Gaps = 19/442 (4%)

Query: 28  AALTVPTFCGAASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKA 87
           AA   P   G  +  + +  GKS V+   R +  + +AD  IA  VV S Q+ Y+ G   
Sbjct: 42  AAPVPPASSGLNAQSISLGIGKSMVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAV 101

Query: 88  GTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRS 147
           G T +  +D  G  I  YD+ VT D+  L+  L + LP   +I V G+ D V L G V S
Sbjct: 102 GQTNIVFFDSAGRQIAAYDIAVTRDLNGLRTALKQTLPNA-EIQVEGLGDGVMLNGWVTS 160

Query: 148 AASMTTAMDMA-RLYAPDK-VTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRG 205
                 A D+A RL   DK V N + V G  QVML++ VAE++R+++++LG+DL+     
Sbjct: 161 PIDAQQAYDLAVRLVGEDKKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLS----A 216

Query: 206 DFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQV-SIMGFLDVLKQNGLV 264
           +  +G    +   ++      +G  G ++S N   A     G + S+   L  ++  G+V
Sbjct: 217 NMAYG--TAVVNFNNSNPFTQSG--GPLVSSN---ALTTKFGSLPSVTATLRAMESAGVV 269

Query: 265 KVLAEPTLVCRSGEKAEFLAGGEIPIP----VPQGLGTVAIEYKEFGVTLQFLPTVVGDG 320
           + LAEP L   SGE A FLAGGE P+P       G+ T ++ +K+FG+ L F P V+  G
Sbjct: 270 RTLAEPNLTAISGEPATFLAGGEFPVPSGVTCTNGVCTPSVTFKKFGILLNFTPVVMTAG 329

Query: 321 RISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAV 380
           RIS+KV  EVSE+   N V I   ++P+I +RR  +TVE+  G S A+AGL+++  +QA+
Sbjct: 330 RISLKVMTEVSEVSSDNSVIISNMSVPSIKTRRVESTVEIPSGGSLAMAGLIQEQTKQAI 389

Query: 381 NKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEY 440
           N  P    +P+LGTLFRS ++   +TEL+++VTP++ + +       P D + + S  + 
Sbjct: 390 NGMPGAAQLPILGTLFRSRDYINRQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQS 449

Query: 441 FILGRMEGSRRADATAAAARTY 462
            +LG +            ARTY
Sbjct: 450 DLLGSINKLYGVPGRTEPARTY 471