Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 484 a.a., putative bacterial type II/III secretion system protein from Phaeobacter inhibens DSM 17395

 Score =  327 bits (837), Expect = 7e-94
 Identities = 185/426 (43%), Positives = 269/426 (63%), Gaps = 7/426 (1%)

Query: 40  SSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDGGG 99
           ++ L+V   ++ VV +  P   L+IA+ +IA +  LS + +YV GK  G TTLTL D  G
Sbjct: 54  AANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASG 113

Query: 100 AVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDMAR 159
            +I   DV+V  D+++ KE L ++LPGE  I V   ND + L+G V S+A +  A+D+A 
Sbjct: 114 RLITNVDVRVAADVSEFKERLRQILPGEK-IEVRTANDGIVLSGVVSSSARLQRALDLAE 172

Query: 160 LYAPDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIFGMLNQLFTLD 219
            YAP++V+NLM VGGV QVML+V+ AEM+R V + L   L    +G    G+     TL+
Sbjct: 173 RYAPERVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGV--KGGNSVGVNGGTSTLN 230

Query: 220 SQKGVVDAGPSGAVLSPNVN-GAF--RITSGQVSIMGFLDVLKQNGLVKVLAEPTLVCRS 276
           +Q G +    SG + + N N GAF     +G   +   L+ L+Q G+V+ LAEP L   S
Sbjct: 231 TQ-GALTNSLSGNIPAGNDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALS 289

Query: 277 GEKAEFLAGGEIPIPVPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYT 336
           G++A+FLAGGE PIPV Q  G + IE+K FG+ L F+P VV    I++++   VS +D T
Sbjct: 290 GQEAKFLAGGEYPIPVAQEDGIITIEFKPFGIELNFVPRVVDADVINLEMKAAVSAIDPT 349

Query: 337 NVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLF 396
           N +++ G +I A + R  STTVEL DG+SFAIAGL+RD+ R + ++ P +GD+PVLG+LF
Sbjct: 350 NSIELNGLSIAAFSRRETSTTVELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLF 409

Query: 397 RSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEYFILGRMEGSRRADATA 456
           RS+N+Q+ +TELVIIV+ HL  P    A  LPTD  R PS  E F++GR+   ++  A+ 
Sbjct: 410 RSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQKGPASE 469

Query: 457 AAARTY 462
            A + +
Sbjct: 470 VAKQDF 475