Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 493 a.a., type II and III secretion system protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  668 bits (1723), Expect = 0.0
 Identities = 338/467 (72%), Positives = 395/467 (84%), Gaps = 9/467 (1%)

Query: 24  ALSCAAL-TVPTFCGAASSE-------LQVATGKSSVVSTSRPVGRLAIADEAIAGVVVL 75
           A +CA L TV     AA ++       + +A GKS VV T++P  R++++DEAIAGVVVL
Sbjct: 20  AAACAVLATVLLLAAAAQAQADATPQAVPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVL 79

Query: 76  SPQQVYVTGKKAGTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGV 135
           SPQQVYVTGKKAG  TLTLW+G GA+  VYD+QVTPD+AQLKEMLHRVLP E DIMVM V
Sbjct: 80  SPQQVYVTGKKAGGATLTLWNGAGAITQVYDIQVTPDLAQLKEMLHRVLPDEKDIMVMAV 139

Query: 136 NDTVTLAGTVRSAASMTTAMDMARLYAPDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERL 195
            +++TLAGTVRSAA MTTA+D+A++YAPDKVTNLMQVGGVHQV+LEVKVAEMR++V+ERL
Sbjct: 140 GESITLAGTVRSAAGMTTALDVAKMYAPDKVTNLMQVGGVHQVLLEVKVAEMRKSVLERL 199

Query: 196 GIDLTYAWRGDFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFL 255
           GIDLTYAW  DF FGMLNQLFTLDSQKGVV  GP+GAV+SPNV G FR TSG+ S+MGFL
Sbjct: 200 GIDLTYAWNNDFAFGMLNQLFTLDSQKGVVGVGPTGAVVSPNVTGMFRATSGRASLMGFL 259

Query: 256 DVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIPVPQGLGTVAIEYKEFGVTLQFLPT 315
           DVLKQNGLVKVLAEPTL+CRSGE A+FLAGGEIPIPVPQGLGTVAIE+K++GVTL F PT
Sbjct: 260 DVLKQNGLVKVLAEPTLICRSGENADFLAGGEIPIPVPQGLGTVAIEFKKYGVTLGFTPT 319

Query: 316 VVGDGRISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDD 375
           VV D  ISM+V+PEVSELDY+NV++I GFTIPAI++RRA+TTVELADGQSFA+AGLLRD+
Sbjct: 320 VVSDKLISMRVSPEVSELDYSNVIEINGFTIPAISTRRAATTVELADGQSFAVAGLLRDE 379

Query: 376 VRQAVNKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREP 435
           VR+ + KYPVLGD+P+LGTLFRSSNWQKNETELVIIVTP LAKPL+    +LPTD +REP
Sbjct: 380 VRENIKKYPVLGDVPLLGTLFRSSNWQKNETELVIIVTPRLAKPLDGATAKLPTDGFREP 439

Query: 436 SAFEYFILGRMEGSRRADATAAAARTYGTTGAGAPSGMEGAFGHMLP 482
           S FE+F+ G+MEG+  A  TA AA       A APSGMEG FGH+LP
Sbjct: 440 SEFEFFLQGKMEGAAPA-ITAPAAYANPRNSADAPSGMEGEFGHVLP 485