Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 373 a.a., type II and III secretion system protein from Marinobacter adhaerens HP15

 Score =  165 bits (418), Expect = 2e-45
 Identities = 110/376 (29%), Positives = 172/376 (45%), Gaps = 60/376 (15%)

Query: 39  ASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDGG 98
           A   + +  G+  V++ S P+ +++ ++  +  V   +  +V VT +  G+  + +W  G
Sbjct: 11  AQQPIDMGPGEQHVLAFSAPLTKVSASNPDVVSVTASAENEVLVTAEGPGSAAVRVWLQG 70

Query: 99  GAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDMA 158
                    Q +P + +    + R+L G   I                            
Sbjct: 71  ---------QTSPQMTEFN--VSRLLGGRRSIS--------------------------- 92

Query: 159 RLYAPDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIFGMLNQLFTL 218
                             QV  ++++ E+ R+ +  LG+  +  + G    G      + 
Sbjct: 93  -----------------SQVQTDIRIVEVNRSELNTLGVYYSKLFNG----GSQTIALSP 131

Query: 219 DSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVKVLAEPTLVCRSGE 278
               G    GPS         G F + S   S +  ++ L+  G    LAEP+LV  SG+
Sbjct: 132 PGAGGFRGFGPSAGATGITTEG-FNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQ 190

Query: 279 KAEFLAGGEIPIPVPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYTNV 338
            A FL+GGE PIPV    G V IE+KEFGV+L   PTVV D  I +KVAPEVSELD+T+ 
Sbjct: 191 TATFLSGGEFPIPVSSDNGEVEIEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSG 250

Query: 339 VQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLFRS 398
           V   G  +P +  RR  TTV +A G+SF I+GL+        ++ P LG++PV+G  FRS
Sbjct: 251 VSTGGVAVPGLRIRRTQTTVTMAPGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRS 310

Query: 399 SNWQKNETELVIIVTP 414
                 + EL+++VTP
Sbjct: 311 DRVASEDKELIMVVTP 326