Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 474 a.a., type II and III secretion system protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  326 bits (835), Expect = 1e-93
 Identities = 198/480 (41%), Positives = 270/480 (56%), Gaps = 35/480 (7%)

Query: 20  LCTIALSCAALTVPTFC-------GAASSELQVATGKSSVVSTSRPVGRLAIADEAIAGV 72
           L  +AL  +  T P          G A S LQV   ++ VV +  P   L++A+  IA +
Sbjct: 11  LLGLALGASIGTAPAMAQVLRVQEGQADSTLQVPMNRAVVVESDIPFAELSVANPGIADI 70

Query: 73  VVLSPQQVYVTGKKAGTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMV 132
             LS + +YV GK  G TT+TL    G +I   DVQVTPDIA+ KE L ++LPGEN I V
Sbjct: 71  ATLSDRSIYVLGKSQGRTTMTLLGADGRLITNVDVQVTPDIAEFKERLEQILPGEN-IEV 129

Query: 133 MGVNDTVTLAGTVRSAASMTTAMDMARLYAPDKVTNLMQVGGVHQVMLEVKVAEMRRNVM 192
              ND V L+GT  S  +M  A+D+A+ YAPD+V+NLM +GG  QVML+V+ AEM+R+V 
Sbjct: 130 RTANDGVVLSGTASSVTAMDRALDLAQRYAPDRVSNLMSIGGSQQVMLKVRFAEMQRSVS 189

Query: 193 ERLGIDLTYAWRGD---FIFGMLNQLFTLDSQKGVVDAGPSGAV------LSPNVNGAFR 243
           ++L   LT  + G    F  G+           G+ D G  G        L+P   G   
Sbjct: 190 KQLSGGLTAIYSGTDGAFSVGL--------GSGGLTDGGSIGGANSTEFTLNPEAAGTIG 241

Query: 244 I--TSGQVSIMGFLDVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIPVPQGLGTVAI 301
           +    G VS+   L+ L+  G+V+ LAEP L   SG++A FLAGGE PIPV  G G +++
Sbjct: 242 LGFNIGNVSLGILLEALESKGVVRTLAEPNLTTLSGQEASFLAGGEYPIPVADGDGGISV 301

Query: 302 EYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELA 361
           EYK FGV L F+PTV+ D  I++++   VS LD +  +     T+   + R   TTV+L 
Sbjct: 302 EYKPFGVELDFIPTVLDDDVINLELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLR 361

Query: 362 DGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLE 421
           DG SFAIAGLL DD R    + P LGD+PVLG LFRS+++ ++++ELVIIVT HL  P  
Sbjct: 362 DGDSFAIAGLLEDDFRDFAGQVPWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTR 421

Query: 422 ANATRLPTDAYREPSAFEYFILGRMEGSRRADATAAAARTYGTTGAGAPSGMEGAFGHML 481
             A  LPTD  R PS  E+F+ G +    R D         G  G  A     G++G++L
Sbjct: 422 GEALVLPTDRVRIPSEREFFLNGNLV---REDTPRR-----GAAGEVAQQDFSGSYGYVL 473