Pairwise Alignments

Query, 776 a.a., outer membrane protein, OMP85 family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 618 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  233 bits (594), Expect = 2e-65
 Identities = 192/596 (32%), Positives = 267/596 (44%), Gaps = 36/596 (6%)

Query: 203 PLRVTLTLFPGPLYTVADSRVVYRAGAGHSEVADDKAGMTGVVGMVGPA--DAPDQTSAS 260
           P+R TLT  PG      D  +      G   V D +  ++G +G+   A  D     +  
Sbjct: 37  PVRYTLTFEPG----TDDEELREALENGSQLVQDQEEPVSGDLGLAIKARDDRDRLLAVL 92

Query: 261 DQTSATGQAADSAGAGDDV----PSPSFAHGTPEEGGMKGRPAGIAVPTADADSAPVPEG 316
            + +  G        G D+    P P+F  G P    ++  P     P     +  + EG
Sbjct: 93  YEKARYGGTVSILVNGQDIDSLPPDPAFPDGQPVPVVVRVAPG----PAFTLGTVRL-EG 147

Query: 317 FPRALSDAGVAGGAPARADD--ILDAVARIPVFLHERGHPFAVVTGTRFEVDHAAHTLHA 374
               L  A       ARAD   I+ A  +I   L E+  P A +       DHA  T+  
Sbjct: 148 DAARLDPAAYDLKRGARADSTLIIKAGEQIVNDLKEQSRPLAKLAERSVVADHATSTVDV 207

Query: 375 TVTVDPGPYVLMGGLDVEGADDVSRDYVATYVGWRPGQPWDERLVERFRESLRGTGLFSG 434
           T+  D GP   +G L V GA  V  D+V  Y     G+P+    + +  E LR   +FS 
Sbjct: 208 TIRADGGPVAPVGNLTVSGARTVDPDFVKDYSRLNHGRPYSPENIRKAAERLRQLNVFSS 267

Query: 435 MEVVPADHDDATGCRPVMARLTYGPPRSFGGGLRYDSALGPGVLAFWEHRNLWGGGERLR 494
           + +  AD     G  P+  +++ G  R FG G +  +  G G+  +W HRNL+G  E LR
Sbjct: 268 VTINEADGLAPDGTIPMNIQVSEGKHRYFGFGGQVSTTDGLGLQGYWGHRNLFGRAESLR 327

Query: 495 LELPVWERRQEVV----------ASFRKPFLLRPDQDFIADAWARNENSDAYDQRAGAVS 544
           +E  V +R  E              F KP    P   F A   A   + DAY  +    +
Sbjct: 328 IEGSV-DRLGETTDVAGLDYSAGILFAKPGAFGPASTFTASVKAAIVDPDAYSAKTVTAA 386

Query: 545 ASVERRISRHLWASAGGTTEGGSINDHQGPERSYSMWGVPLTIRYDGTDNLLDPHEGVRA 604
           A     +S     S G       ++D  G   SY    +P     D  D+ L+P EG RA
Sbjct: 387 AGAAFELSPEDTFSVGAEVGWADVDDAFG-SNSYITAALPFEYVRDARDDKLNPTEGYRA 445

Query: 605 ALSTTPYTGVYHEWRSMVRS-RLDASAYTAL-PGGRTVLALRAAAGAL-HGESPADIPAS 661
            ++  P   +  E ++   S    AS Y A     R VLA +  AG L  G+  +DIPA+
Sbjct: 446 LINAKPSYEI--EGKTFFSSFEASASGYYAFGTEKRFVLAGKLGAGVLVGGDELSDIPAT 503

Query: 662 FRFYSGGGGSVRGYAYQSLGPRDGDVPL-GGGSFGEVGLEARTRITETLGLVTFVDGGNV 720
            RF+ GGGGSVRGY+YQ + PRD D  L GG S+    LEAR  +T+T+G+V F+D G V
Sbjct: 504 RRFFLGGGGSVRGYSYQEISPRDADDELTGGRSYVSGSLEARIAVTDTIGVVPFIDAGTV 563

Query: 721 YEESMPRFGDGMRFGAGVGLRYYTAIGPLRFDVATPVNPREDDAPLQFYFSIGQSF 776
            + + P F D +R GAG+GLRY T  GP+R D A P+N          Y  IGQSF
Sbjct: 564 SDSTAPDFSD-IRAGAGIGLRYATPFGPIRLDFAVPLNKYPGGTDYGIYAGIGQSF 618



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 23/177 (12%)

Query: 118 PVPYEVTFSIADDAGASSVSTEERSALLDAVRGVSLLERLADQAPDSVTGVERRLRSDED 177
           PV Y +TF    D        EE   L +A+   S L +  ++      G+  + R D D
Sbjct: 37  PVRYTLTFEPGTD-------DEE---LREALENGSQLVQDQEEPVSGDLGLAIKARDDRD 86

Query: 178 EARNVLHSRGFYAGRVEGRLDAA-------------SSPLRVTLTLFPGPLYTVADSRVV 224
               VL+ +  Y G V   ++                 P+ V + + PGP +T+   R+ 
Sbjct: 87  RLLAVLYEKARYGGTVSILVNGQDIDSLPPDPAFPDGQPVPVVVRVAPGPAFTLGTVRLE 146

Query: 225 YRAGAGHSEVADDKAGMTGVVGMVGPADAPDQTSASDQTSATGQAADSAGAGDDVPS 281
             A        D K G      ++  A         +Q+    + A+ +   D   S
Sbjct: 147 GDAARLDPAAYDLKRGARADSTLIIKAGEQIVNDLKEQSRPLAKLAERSVVADHATS 203