Pairwise Alignments
Query, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Subject, 966 a.a., uvrABC system protein A from Phaeobacter inhibens DSM 17395
Score = 903 bits (2333), Expect = 0.0
Identities = 471/964 (48%), Positives = 638/964 (66%), Gaps = 39/964 (4%)
Query: 6 IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65
I + GAR+HNLKN+D+DIPRD+LVV+ G SGSGKS+LAFD +YAEGQRRYVESLSAYARQ
Sbjct: 7 IEVRGAREHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 66 FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125
FL M+KP VD I GLSPAIS+EQ+T+++NPRSTVGTVTE+YD+LR+ +AR G Y P
Sbjct: 67 FLDMMEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARAGTPYSPAT 126
Query: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185
G PIEA+ +++ I+ L EGTR ++AP+V +KG + F +L+ +GF RV+V+GE
Sbjct: 127 GMPIEAQQVQDMVDRIMTLEEGTRGFLLAPIVRDRKGEYRKEFLELRKQGFQRVKVDGEF 186
Query: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNGRLVVEVP---GQG 242
+D+ P LDK +H ID+VVDR+VV+EG+ RLADS+ AL +G ++E +G
Sbjct: 187 YELDEPPTLDKKFRHDIDVVVDRLVVREGVETRLADSLRTALDLADGIAILETAPRAAEG 246
Query: 243 ETVHSTESV-------CPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAP 295
E E + CP ++P P+LFSFN+P GACP C GLG +F+ L+ P
Sbjct: 247 EEAPEPERITFSENFACPVSGFTIPEIEPRLFSFNAPFGACPECDGLGVELFFDERLVVP 306
Query: 296 NRGLSLNTGALLPWKNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDGSL 355
++ L + GAL PW+ + Q +E +AK + +T P +V G G
Sbjct: 307 DQNLKIYDGALAPWRKGKSPYFLQT-IEAIAKHYQFNKNTKWKDLPNKVQQVFLRGSGDE 365
Query: 356 PHAAAGDEGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGDA-W-RDEMSRY 413
DEG + + GV +E + D+ W R+E RY
Sbjct: 366 EIKFRYDEGG---------------RVYEVERVFEGVIPNMERRYRETDSNWIREEFERY 410
Query: 414 RQSRPCPACHGARLRPEALSVRVDD--------LDIHSFCSLSVARALAWLRE--RSFDG 463
+ +R C C G RLR EAL+V++ L + +S+ ALAW+ +
Sbjct: 411 QNNRSCGVCEGYRLREEALAVKIGPTGGRPDQLLHVGQVVQMSIREALAWIEDVPNQLSP 470
Query: 464 RHTLVAEPLLKELTHRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTY 523
+ +A ++KE+ RL F+ NVGL+Y++L RN TLSGGE+QRIRLASQ+GSGL GV Y
Sbjct: 471 QKQEIARAIVKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLY 530
Query: 524 VLDEPSIGLHPRDNERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGE 583
VLDEPSIGLH RDN+RL+ TL+ L+ +GNTV+VVEHDE IREAD V ++GPG+G GG+
Sbjct: 531 VLDEPSIGLHQRDNDRLLETLKNLRDQGNTVIVVEHDEDAIREADYVFDIGPGAGVHGGQ 590
Query: 584 VVFSGRVPDLLGTADTLTARYLRGEMTIPLPESRRKGDG-ALTLRGVTTNNLQGLDCSIP 642
VV G + ++T +YL G I +P RRKG+G ++ + T NNL+ + P
Sbjct: 591 VVSHGTPEMVAADEGSITGQYLSGTREIAVPSVRRKGNGKSVKVVKATGNNLKNVTAEFP 650
Query: 643 FGVLTCVTGVSGSGKSSLVVDTLYKHVALARGIKVDSPGSIGGIDGLDRIERIVAIDQTP 702
G CV+GVSG GKS+L ++TL+K ++ +P I GL+ +++++ IDQ P
Sbjct: 651 LGKFLCVSGVSGGGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRP 710
Query: 703 IGRTPRSNPATYTKIFDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVE 762
IGRTPRSNPATYT F IR+ FA +++ RGYKPGRFSFNV+GGRCEAC GDG +++E
Sbjct: 711 IGRTPRSNPATYTGAFTPIREWFAGLPESKTRGYKPGRFSFNVKGGRCEACQGDGVIKIE 770
Query: 763 MHFLPDVFVTCDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGV 822
MHFLPDV+V C+ CKG RYN ETLE+++KG +IA+VLD+TV A+QFF+ P + ++
Sbjct: 771 MHFLPDVYVECETCKGARYNRETLEIQFKGKSIADVLDMTVEDAQQFFQAVPSIRDKMDA 830
Query: 823 LEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLI 882
L VGL Y+++GQ ATTLSGGEAQR+K+S+EL KRS TLYILDEPTTGLH +V KL+
Sbjct: 831 LMRVGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLL 890
Query: 883 RVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVT 942
VLH+LV++G +VVVIEHN DVI ++D +ID+GP GG+ GG IV+AGTPE++ A S T
Sbjct: 891 EVLHELVEQGNSVVVIEHNLDVIKTADWIIDIGPEGGDGGGEIVAAGTPEDVAAAKGSHT 950
Query: 943 GAFL 946
G +L
Sbjct: 951 GHYL 954
Score = 154 bits (388), Expect = 4e-41
Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 25/205 (12%)
Query: 772 TCDVCKGRRYNHETLEVRY--------KGLNIAEVLDLTVRQARQFFENYP--------- 814
+C VC+G R E L V+ + L++ +V+ +++R+A + E+ P
Sbjct: 415 SCGVCEGYRLREEALAVKIGPTGGRPDQLLHVGQVVQMSIREALAWIEDVPNQLSPQKQE 474
Query: 815 -------VLERRLGVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILD 867
+ RLG L +VGLEYL L + A TLSGGE+QRI+++ ++G L G LY+LD
Sbjct: 475 IARAIVKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGS-GLTGVLYVLD 533
Query: 868 EPTTGLHMHEVGKLIRVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVS 927
EP+ GLH + +L+ L L D+G TV+V+EH+ D I +D+V D+GPG G +GG++VS
Sbjct: 534 EPSIGLHQRDNDRLLETLKNLRDQGNTVIVVEHDEDAIREADYVFDIGPGAGVHGGQVVS 593
Query: 928 AGTPEEIIADSASVTGAFLVQERAI 952
GTPE + AD S+TG +L R I
Sbjct: 594 HGTPEMVAADEGSITGQYLSGTREI 618
Score = 117 bits (293), Expect = 4e-30
Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 15/189 (7%)
Query: 419 CPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELTH 478
C C GAR E L ++ I ++V D + A P +++
Sbjct: 781 CETCKGARYNRETLEIQFKGKSIADVLDMTVE-----------DAQQFFQAVPSIRD--- 826
Query: 479 RLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRDN 537
+++ ++ VGL YI +G+ +TLSGGEAQR++L+ +L G T Y+LDEP+ GLH D
Sbjct: 827 KMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDV 886
Query: 538 ERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTA 597
+L+ L L ++GN+V+V+EH+ I+ AD +I++GP G GGE+V +G D+
Sbjct: 887 RKLLEVLHELVEQGNSVVVIEHNLDVIKTADWIIDIGPEGGDGGGEIVAAGTPEDVAAAK 946
Query: 598 DTLTARYLR 606
+ T YL+
Sbjct: 947 GSHTGHYLK 955
Score = 61.2 bits (147), Expect = 3e-13
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 623 ALTLRGVTTNNLQGLDCSIPFGVLTCVTGVSGSGKSSLVVDTLYKH---------VALAR 673
++ +RG +NL+ +D IP L +TG+SGSGKSSL DT+Y A AR
Sbjct: 6 SIEVRGAREHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 65
Query: 674 GI--KVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATYTKIFDEIRDIFA 726
++ P +D + + ++I+Q + PRS T T+I+D +R +FA
Sbjct: 66 QFLDMMEKP----DVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFA 116