Pairwise Alignments

Query, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 946 a.a., excinuclease ABC, ATPase subunit (A) from Marinobacter adhaerens HP15

 Score =  927 bits (2397), Expect = 0.0
 Identities = 485/948 (51%), Positives = 647/948 (68%), Gaps = 24/948 (2%)

Query: 6   IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65
           I I+GAR HNLKN+D+D+PRD+L+V+ G SGSGKS+LAFD +YAEGQRRYVESLS YARQ
Sbjct: 4   IQIKGARTHNLKNIDLDMPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSTYARQ 63

Query: 66  FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125
           FL  M+KP VD IEGLSPAIS+EQ++++ NPRSTVGT+TE+YD+LR+ +AR G   CP  
Sbjct: 64  FLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARAGEPRCPDH 123

Query: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185
           G+P+EA+   +++  ++A+   ++ +I+AP++  +KG H    + ++++GF+RVRV+G  
Sbjct: 124 GQPLEAQTISQMVDQVVAMPADSKLMILAPVIRDRKGEHLQVIETMRSQGFIRVRVDGTV 183

Query: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNG-RLVVEVPGQGET 244
             IDDVP LDK RKH ID+VVDR  VK G+  RLA+S E AL   +G  LV  + G+GE 
Sbjct: 184 YDIDDVPALDKKRKHQIDVVVDRFKVKPGLEQRLAESFETALDLADGIALVAPMSGEGEE 243

Query: 245 -VHSTESVCPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAPNRGLSLNT 303
              S    C  C  +L    P+LFSFN+P GACP C GLG   +F+P  +  +   +L +
Sbjct: 244 QTFSARYACTQCGYALSELEPKLFSFNNPAGACPTCDGLGVKQFFDPEKIVQHPEATLAS 303

Query: 304 GALLPWKNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDGSLPHAAAGDE 363
           GA+  W    V+  +   L  +A  +G+ L TP +  P     VL  G        +GDE
Sbjct: 304 GAIKGWDRRAVY--YFQMLGSVADHYGIDLETPWADLPEDFRNVLLFG--------SGDE 353

Query: 364 GSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGDA--WRDEMSRYRQSRPCPA 421
                   R    RG       P  + G+   LE   +  D+   R+E++R   ++PC  
Sbjct: 354 D----IPFRYVNSRGHIMEKAHP--FEGILPNLERRYRETDSQSMREELARNLSTQPCKE 407

Query: 422 CHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELTHRLE 481
           C G+RLR  A  V +++ +I     L V  A  +    +  GR   +AE +LKE+  RL+
Sbjct: 408 CGGSRLRRSARHVFIEEHNISDVTHLPVGDAHDYFETLALPGRKGEIAEKILKEVRQRLQ 467

Query: 482 FMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLHPRDNERLI 541
           F+VNVGL+Y++L R+  TLSGGEAQRIRLASQ+G+GLVGV Y+LDEPSIGLH RDN+RL+
Sbjct: 468 FLVNVGLEYLTLERSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLL 527

Query: 542 RTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTADTLT 601
            TL  L+  GNTV+VVEHDE  IR AD VI++GPG+G  GG+V+  G    ++   D+LT
Sbjct: 528 ATLTHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGKVIGQGTPQQIIDNPDSLT 587

Query: 602 ARYLRGEMTIPLPESRRKGDG-ALTLRGVTTNNLQGLDCSIPFGVLTCVTGVSGSGKSSL 660
            +YL G   I +P+ R KG G  LTL G T NNL+ +   +P G++TCVTGVSGSGKS+L
Sbjct: 588 GQYLNGTREIAIPKQRNKGSGKTLTLSGATGNNLKDVTLDLPLGIMTCVTGVSGSGKSTL 647

Query: 661 VVDTLYKHVALARGIKVDS--PGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATYTKIF 718
           +  TLY  VA A+  K  S        + GLD +++++ IDQ+PIGRTPRSNPATYT +F
Sbjct: 648 INSTLYP-VAAAKLNKATSLNHAPYQSLKGLDHLDKVIDIDQSPIGRTPRSNPATYTGLF 706

Query: 719 DEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVFVTCDVCKG 778
             IR++FA T +AR RGYKPGRFSFNV+GGRCEAC GDG ++VEMHFLPD++V CDVCKG
Sbjct: 707 TPIRELFAGTQEARSRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKG 766

Query: 779 RRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEYLRLGQPAT 838
           +RYN ETLEVRYKG NI EVL++TV + R+FF+  P L R+L  L DVGL Y+RLGQ A 
Sbjct: 767 KRYNRETLEVRYKGKNINEVLEMTVEEGREFFDAVPFLARKLQTLMDVGLSYIRLGQSAV 826

Query: 839 TLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVDRGATVVVI 898
           TLSGGEAQR+K+++EL KR    TLYILDEPTTGLH +++ +L+ VL +L D G T+VVI
Sbjct: 827 TLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFYDIQQLLNVLERLRDHGNTIVVI 886

Query: 899 EHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFL 946
           EHN DVI ++D ++DLGP GG  GG+I++ GTPEE+  + AS TG +L
Sbjct: 887 EHNLDVIKTADWIVDLGPEGGSGGGQIIAEGTPEEVAENPASHTGRYL 934



 Score =  144 bits (364), Expect = 2e-38
 Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 15/194 (7%)

Query: 773 CDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPV--------------LER 818
           C  C G R       V  +  NI++V  L V  A  +FE   +              + +
Sbjct: 405 CKECGGSRLRRSARHVFIEEHNISDVTHLPVGDAHDYFETLALPGRKGEIAEKILKEVRQ 464

Query: 819 RLGVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEV 878
           RL  L +VGLEYL L + A TLSGGEAQRI+++ ++G   L G +YILDEP+ GLH  + 
Sbjct: 465 RLQFLVNVGLEYLTLERSADTLSGGEAQRIRLASQIGA-GLVGVMYILDEPSIGLHQRDN 523

Query: 879 GKLIRVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADS 938
            +L+  L  L D G TV+V+EH+ D I ++DHVID+GPG G +GG+++  GTP++II + 
Sbjct: 524 DRLLATLTHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGKVIGQGTPQQIIDNP 583

Query: 939 ASVTGAFLVQERAI 952
            S+TG +L   R I
Sbjct: 584 DSLTGQYLNGTREI 597



 Score =  128 bits (322), Expect = 2e-33
 Identities = 72/194 (37%), Positives = 110/194 (56%), Gaps = 15/194 (7%)

Query: 418 PCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELT 477
           PC  C G R   E L VR    +I+    ++V            +GR    A P L    
Sbjct: 760 PCDVCKGKRYNRETLEVRYKGKNINEVLEMTVE-----------EGREFFDAVPFL---A 805

Query: 478 HRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRD 536
            +L+ +++VGL YI LG++  TLSGGEAQR++LA +L     G T Y+LDEP+ GLH  D
Sbjct: 806 RKLQTLMDVGLSYIRLGQSAVTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFYD 865

Query: 537 NERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGT 596
            ++L+  L RL+  GNT++V+EH+   I+ AD +++LGP  G+ GG+++  G   ++   
Sbjct: 866 IQQLLNVLERLRDHGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIAEGTPEEVAEN 925

Query: 597 ADTLTARYLRGEMT 610
             + T RYL+  +T
Sbjct: 926 PASHTGRYLKPMLT 939