Pairwise Alignments

Query, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 942 a.a., excinuclease ABC subunit UvrA from Pantoea sp. MT58

 Score =  893 bits (2308), Expect = 0.0
 Identities = 465/951 (48%), Positives = 631/951 (66%), Gaps = 28/951 (2%)

Query: 6   IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65
           I + GAR HNLKN+++ IPRD+L+VV G SGSGKS+LAFD +YAEGQRRYVESLSAYARQ
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 66  FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125
           FL  M+KP VD IEGLSPAIS+EQ++++ NPRSTVGT+TE++D+LR+ +AR+G   CP  
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123

Query: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185
             P+ A+   +++  +L+  EG R +++AP+V+ +KG H    + L  +G++R R++GE 
Sbjct: 124 DVPLAAQTVSQMVDQVLSQPEGRRLMLLAPVVKDRKGEHTKTLENLATQGYIRARIDGEV 183

Query: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNGRLVV---EVPGQG 242
             + D P L+  +KH I++V+DR  V++ +  RLA+S E  L    G  +V   +     
Sbjct: 184 CDLSDPPKLELQKKHTIEVVIDRFKVRDDLATRLAESFETTLELSGGTAIVADMDDSAAE 243

Query: 243 ETVHSTESVCPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAPNRGLSLN 302
           E + S    CP C  S+    P+LFSFN+P GACP C GLG   YF+P  +  N  LSL 
Sbjct: 244 ELLFSANFACPICGYSMSELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVVQNPELSLA 303

Query: 303 TGALLPWKNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDG--SLPHAAA 360
            GA+  W   R F  +Q  L  LA+     +     + P    +V+ +G G  S+     
Sbjct: 304 GGAIRGWDR-RNFYYFQM-LRSLAEHLDFDIEASFGSLPENVQKVILYGSGKESIEFKYI 361

Query: 361 GDEGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGD--AWRDEMSRYRQSRP 418
            D G     DT  +              + GV   +E   +  +  A R+E++++  +R 
Sbjct: 362 NDRG-----DTSVRRHP-----------FEGVLNNMERRYKETESSAVREELAKFISNRA 405

Query: 419 CPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELTH 478
           C +C G RLR EA  V V++  + +   +S+  A+++       G+   +AE +LKE+  
Sbjct: 406 CASCEGTRLRREARHVFVENTTLPTISEMSIGHAMSFFENMKLSGQRAQIAEKILKEIGD 465

Query: 479 RLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLHPRDNE 538
           RL F+VNVGL+Y+S+ R+  TLSGGEAQRIRLASQ+G+GLVGV YVLDEPSIGLH RDNE
Sbjct: 466 RLSFLVNVGLNYLSMSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNE 525

Query: 539 RLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTAD 598
           RL+ TL  L+  GNTV+VVEHDE  IR AD VI++GPG+G  GG+VV  G V  ++    
Sbjct: 526 RLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTVDQIMAEDA 585

Query: 599 TLTARYLRGEMTIPLPESRRKGDGALTLR--GVTTNNLQGLDCSIPFGVLTCVTGVSGSG 656
           +LT ++L G+  I +PE R KGD A  L+  G   NNL+ +  ++P G+ TC+TGVSGSG
Sbjct: 586 SLTGQFLSGKRGITVPEERVKGDPAKVLKITGARGNNLKDVTLTLPVGLFTCITGVSGSG 645

Query: 657 KSSLVVDTLYKHVALA-RGIKVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATYT 715
           KS+L+ DTL+     A  G  +  P     + GL+  ++++ IDQ+PIGRTPRSNPATYT
Sbjct: 646 KSTLINDTLFPIAQRALNGATIAEPAPYREVAGLEHFDKVIDIDQSPIGRTPRSNPATYT 705

Query: 716 KIFDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVFVTCDV 775
            IF  +R++FA   +AR RGY PGRFSFNVRGGRCEAC GDG L+VEMHFLPD++V CD 
Sbjct: 706 GIFTPVRELFAGVPEARSRGYNPGRFSFNVRGGRCEACQGDGVLKVEMHFLPDIYVPCDQ 765

Query: 776 CKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEYLRLGQ 835
           CKG+RYN ETLEV+YKG +I EVL++T+ +AR+FF+  P L R+L  L DVGL Y+RLGQ
Sbjct: 766 CKGKRYNRETLEVKYKGKSIHEVLEMTIEEAREFFDAVPALARKLQTLIDVGLTYIRLGQ 825

Query: 836 PATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVDRGATV 895
            ATTLSGGEAQR+K++REL KR    TLYILDEPTTGLH  ++ +L+ VLHQL ++G T+
Sbjct: 826 SATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRNQGNTI 885

Query: 896 VVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFL 946
           VVIEHN DV+ ++D ++DLGP GG  GG I+ AGTPE +     S T  FL
Sbjct: 886 VVIEHNLDVVKTADWIVDLGPEGGSGGGEILVAGTPETVAECEKSHTARFL 936



 Score =  146 bits (369), Expect = 5e-39
 Identities = 77/194 (39%), Positives = 117/194 (60%), Gaps = 15/194 (7%)

Query: 773 CDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPV--------------LER 818
           C  C+G R   E   V  +   +  + ++++  A  FFEN  +              +  
Sbjct: 406 CASCEGTRLRREARHVFVENTTLPTISEMSIGHAMSFFENMKLSGQRAQIAEKILKEIGD 465

Query: 819 RLGVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEV 878
           RL  L +VGL YL + + A TLSGGEAQRI+++ ++G   L G +Y+LDEP+ GLH  + 
Sbjct: 466 RLSFLVNVGLNYLSMSRSAETLSGGEAQRIRLASQIGA-GLVGVMYVLDEPSIGLHQRDN 524

Query: 879 GKLIRVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADS 938
            +L+  L  L D G TV+V+EH+ D I ++DHVID+GPG G +GG++V+ GT ++I+A+ 
Sbjct: 525 ERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTVDQIMAED 584

Query: 939 ASVTGAFLVQERAI 952
           AS+TG FL  +R I
Sbjct: 585 ASLTGQFLSGKRGI 598



 Score =  126 bits (316), Expect = 8e-33
 Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 15/190 (7%)

Query: 418 PCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELT 477
           PC  C G R   E L V+     IH    +++  A  +     FD          +  L 
Sbjct: 762 PCDQCKGKRYNRETLEVKYKGKSIHEVLEMTIEEAREF-----FDA---------VPALA 807

Query: 478 HRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRD 536
            +L+ +++VGL YI LG++ +TLSGGEAQR++LA +L     G T Y+LDEP+ GLH  D
Sbjct: 808 RKLQTLIDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFAD 867

Query: 537 NERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGT 596
            ++L+  L +L+ +GNT++V+EH+   ++ AD +++LGP  G+ GGE++ +G    +   
Sbjct: 868 IQQLLEVLHQLRNQGNTIVVIEHNLDVVKTADWIVDLGPEGGSGGGEILVAGTPETVAEC 927

Query: 597 ADTLTARYLR 606
             + TAR+L+
Sbjct: 928 EKSHTARFLK 937