Pairwise Alignments

Query, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 946 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  838 bits (2164), Expect = 0.0
 Identities = 443/954 (46%), Positives = 636/954 (66%), Gaps = 32/954 (3%)

Query: 6   IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65
           I++ GAR HNLK++D +IPR+ L V+ G SGSGKS+LAFD ++AEGQRRY+E+ SAYAR 
Sbjct: 12  INVYGARVHNLKDIDAEIPRNSLTVITGLSGSGKSSLAFDTIFAEGQRRYIETFSAYARN 71

Query: 66  FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125
           FL  +++P VDKI GLSP IS+EQ+T+ +NPRSTVGT TE+YD+LR+ YAR G  Y    
Sbjct: 72  FLGNLERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLYARAGIAYSYLS 131

Query: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185
           G  +     ++I+  IL   +G +  ++APLV  +KG + + F++++ +G++ VR++GE 
Sbjct: 132 GEEMVKYTEEQILDLILKDYKGKKIYLLAPLVRSRKGHYKELFEQVRKKGYLYVRIDGEL 191

Query: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNGRLVVEVPGQGETV 245
             +     LD+ + H I++V+D+++V E    RL  SV  A+R G+G L++ +  Q E+V
Sbjct: 192 REVTHGMKLDRYKNHDIEVVIDKLIVAEKDDKRLKQSVATAMRQGDGLLMI-LDAQTESV 250

Query: 246 --HSTESVCPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAPNRGLSLNT 303
             +S   +CP   +S   P+P  FSFNSPQGACP C GLG V+  +   + P+R LS+  
Sbjct: 251 RHYSKRLMCPVTGLSYREPAPHNFSFNSPQGACPKCKGLGVVNQIDVDKVIPDRELSIYE 310

Query: 304 GALLP---WKNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDGSLPHAAA 360
           GA+ P   +KN  +F  WQ  +  L +++  TL TP+       +E + +G        +
Sbjct: 311 GAIAPLGKYKNAMIF--WQ--IGALLEKYEATLKTPVKELSDDAVEEILYGSDDRIKIKS 366

Query: 361 GDEGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGDA--WRDEMSRYRQSRP 418
              G+             + + F    G     Q+L+       A  W ++ +R   +  
Sbjct: 367 SLIGT-------------SSDYFVTYEGVVKYIQMLQEKDASATAQKWAEQFAR---TTV 410

Query: 419 CPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLR--ERSFDGRHTLVAEPLLKEL 476
           CP C GARL  EAL  R+ D +I+   ++ +     WL   ++    +   +A  +LKE+
Sbjct: 411 CPECKGARLNKEALHFRIHDKNINDLANMDINELYDWLMNVDQFLSDKQKKIAAEILKEI 470

Query: 477 THRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLHPRD 536
             RL+F+++VGLDY++L R+  +LSGGE+QRIRLA+Q+GS LV V Y+LDEPSIGLH RD
Sbjct: 471 RTRLKFLLDVGLDYLALNRSSVSLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRD 530

Query: 537 NERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGT 596
           N RLIR+L+ L+  GN+V+VVEHD+  +  AD VI++GP +G LGGEVVFSG   ++L T
Sbjct: 531 NLRLIRSLKELRDMGNSVIVVEHDKDMMLAADYVIDMGPKAGRLGGEVVFSGTPSEMLQT 590

Query: 597 ADTLTARYLRGEMTIPLPESRRKGDG-ALTLRGVTTNNLQGLDCSIPFGVLTCVTGVSGS 655
            +T+T++YL GEM I +P  RRKG+G ++ L+G   NNL+ +D   P G L CVTGVSGS
Sbjct: 591 -ETMTSQYLNGEMKIEVPAKRRKGNGKSIWLKGAKGNNLKNVDVEFPLGKLICVTGVSGS 649

Query: 656 GKSSLVVDTLYKHVALARGIKVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATYT 715
           GKS+L+ +TL   ++      +  P     I+GL+ I+++V +DQ+PIGRTPRSNPATYT
Sbjct: 650 GKSTLINETLQPILSQKFYRSLQDPLEYDSIEGLENIDKVVDVDQSPIGRTPRSNPATYT 709

Query: 716 KIFDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVFVTCDV 775
            +F +IR++F    +A+ RGYKPGRFSFNV GGRCEAC G+G   +EM+FLPDV+V C+V
Sbjct: 710 GVFSDIRNLFVSLPEAKIRGYKPGRFSFNVSGGRCEACTGNGYKTIEMNFLPDVYVPCEV 769

Query: 776 CKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEYLRLGQ 835
           C G+RYN ETLEVR+KG +IA+VLD+T+ +A +FFEN P +  ++ VL+DVGL Y++LGQ
Sbjct: 770 CHGKRYNRETLEVRFKGKSIADVLDMTINRAVEFFENVPQILNKIKVLQDVGLGYIKLGQ 829

Query: 836 PATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVDRGATV 895
            +TTLSGGE+QR+K++ EL KR    TLYILDEPTTGLH  ++  L+ VL++LVD+G TV
Sbjct: 830 SSTTLSGGESQRVKLATELSKRDTGKTLYILDEPTTGLHFEDIRVLMGVLNKLVDKGNTV 889

Query: 896 VVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFLVQE 949
           +VIEHN DVI  +D++ID+GP GG+ GG ++S GTPEE+       T  FL +E
Sbjct: 890 IVIEHNLDVIKMADYIIDMGPEGGKGGGVLLSYGTPEEVAKSQKGYTPKFLREE 943



 Score =  120 bits (300), Expect = 6e-31
 Identities = 66/193 (34%), Positives = 108/193 (55%), Gaps = 15/193 (7%)

Query: 418 PCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELT 477
           PC  CHG R   E L VR     I     +++ RA+ +                 + ++ 
Sbjct: 766 PCEVCHGKRYNRETLEVRFKGKSIADVLDMTINRAVEFFEN--------------VPQIL 811

Query: 478 HRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRD 536
           ++++ + +VGL YI LG++ +TLSGGE+QR++LA++L     G T Y+LDEP+ GLH  D
Sbjct: 812 NKIKVLQDVGLGYIKLGQSSTTLSGGESQRVKLATELSKRDTGKTLYILDEPTTGLHFED 871

Query: 537 NERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGT 596
              L+  L +L  +GNTV+V+EH+   I+ AD +I++GP  G  GG ++  G   ++  +
Sbjct: 872 IRVLMGVLNKLVDKGNTVIVIEHNLDVIKMADYIIDMGPEGGKGGGVLLSYGTPEEVAKS 931

Query: 597 ADTLTARYLRGEM 609
               T ++LR E+
Sbjct: 932 QKGYTPKFLREEL 944