Pairwise Alignments

Query, 582 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  204 bits (518), Expect = 1e-56
 Identities = 184/640 (28%), Positives = 307/640 (47%), Gaps = 86/640 (13%)

Query: 6   KLAIAFGSLVLV---IIVVGGFSVNRLGLIHDDVQEIASNWIPSIKILAKMQGDMNRIRR 62
           KLA+ FG LVLV   I+ + G++ +  GLI+       SNW+  I     +   + ++R 
Sbjct: 13  KLALGFG-LVLVFTAILALTGWT-SMSGLIN------RSNWMSDI---TSLNAQLTKLRV 61

Query: 63  QQLQHIIATDASAIA-SIESNIEKLK---QQLQDSARIYEKLVSDPSER---GNFEKFLD 115
            +LQ+++A     +A +++++++  K   ++L+ S +  E L           +++K L+
Sbjct: 62  TRLQYMVADGDEKVAETVQTSLDSFKAYQEKLRASFKSPENLKMLDQLGIVIADYQKSLN 121

Query: 116 HTRQYYRAMDKGME---------------LSRVNKNVEAA------------------AL 142
           + R  Y+A     +               L    +N++ A                   L
Sbjct: 122 NMRSGYKASTAARDELTTHAVKSLAVFEQLVTEVRNMDPADANRFEQYRLVTDAKDDLRL 181

Query: 143 DRSEIRGHF--------QAAMDALYAAVE----INDKGSAQSAAEATNVVSSARTFSIVL 190
            R E+RG+         QAA+  L +A++    +    S   A +   + +S   +   L
Sbjct: 182 ARYEVRGYTTNATPETEQAAVSKLDSAIKDLDALKTTFSGTQADQLRQLETSLMAYRTTL 241

Query: 191 VLVAIAIGAGAGVYIVRGTMAQLGEDPGYLYDVSREIASGNLDIHFRESSHRQGVYSAVQ 250
                A G    +   R  M   G+D   +  +S ++    LD   +ES+  +       
Sbjct: 242 QNFKAATGT---IVQARKEMTTQGQD---IVKISEDMYKLQLDRRDQESAQARTTQITCT 295

Query: 251 DMVTTLKAKIAEADEKSEQARRKEQEAQQATLEAEEARRQAERAKAE--GMLQAAVKLEG 308
            +   L    A    +      +E  A    + + +  +     +++  G+LQ  ++  G
Sbjct: 296 LLAIILGIIAAVIITRQITRPLRETLAVVDRIASGDLTQTLAVTRSDELGVLQQGIQRMG 355

Query: 309 V------------VEVLSSASEELSAQIEQSDRGAEEQARRVGETATAMEEMNATVLEVA 356
                        V  ++SA+EELSA  EQ+  G   Q     + ATAM EM+ATV EVA
Sbjct: 356 TTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVA 415

Query: 357 RNAGQAADIAENTRRKAESGAEIVGRVVTGISEVQSQSVALKHDMEDLGRQAEAIGQIMN 416
           RNA QA+  A N  R+A  G ++VG  +  I  + ++       M +L ++++ IG++M+
Sbjct: 416 RNAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQESDKIGKVMD 475

Query: 417 VISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMQATTEVGNAIRGVQG 476
           VI  +A+QTNLLALNAAIEAARAGEAGRGFAVVADEVR LA++T Q+T E+   +  +Q 
Sbjct: 476 VIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQS 535

Query: 477 GTRKNMDNVDRSVKTIEEATQAARLSGEALREIVKMVDTVSDQVRGIATASEQQSAASEE 536
           GTR+    +  S +    +   +R +G +L  I + V ++    + IA A+E+QSA +EE
Sbjct: 536 GTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEE 595

Query: 537 INKSVEQVSAISAETAQAMREAATAVQELANQSQVLKRLV 576
           I++S+  V  +S +TA A  E A +  ELA     L+ +V
Sbjct: 596 ISRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMV 635



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 243 QGVYSAVQDMVTTLKAKIAEADEKSEQARRKEQEAQQATLEAEEARRQAERAKAEGMLQA 302
           +G+    Q     ++  +A     + Q       +++ T+ +    RQA  +    + Q 
Sbjct: 513 RGLAQRTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGS-ITQT 571

Query: 303 AVKLEGVVEVLSSASEELSAQIEQSDRGAEEQARRVGETATAMEEMNATVLEVARNAGQA 362
              ++ + + +++A+EE SA  E+  R          +TA+A EE  A+ +E+AR  GQ 
Sbjct: 572 VSSIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAASSVELARLGGQL 631

Query: 363 ADIAENTR 370
             +    R
Sbjct: 632 QTMVSRFR 639