Pairwise Alignments

Query, 582 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 579 a.a., methyl-accepting chemotaxis protein from Herbaspirillum seropedicae SmR1

 Score =  231 bits (589), Expect = 6e-65
 Identities = 171/581 (29%), Positives = 283/581 (48%), Gaps = 75/581 (12%)

Query: 1   MKLTHKLAIAFGSLVLVIIVVGGFSVNRLGLIHDDVQEIASNWIPSIKILAKMQGDMNRI 60
           ++++ KL   F  +V ++  +G FS+ +L  ++    EI++NW+PSI+ LA++Q  M+R+
Sbjct: 7   LRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAMSRL 66

Query: 61  RRQQLQHIIATDASAIASIESNIEKLKQQLQDSARIYEKLVSDPSERGNFEKFLDHTRQY 120
           R  +LQHI+A DA     +E  ++     L+ +   Y   +S+P E+  + +       +
Sbjct: 67  RSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVEKLIATF 126

Query: 121 YRAMDKGMELSRVNKNVEAAALDRSEIRGHFQAAMDALYAAVEINDKGSAQSAAEATNVV 180
               DK + LSR  K+ EA  L R E    ++ ++  +     +NDKG+  S  +A  + 
Sbjct: 127 VSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNKQADAIY 186

Query: 181 SSARTFSIVLVLVAIAIGAGAGVYIVRGTMAQLGEDPGYLYDVSREIASGNLDIHFRESS 240
           + AR + IV V   I +     V++ R     L E       V++ +A G+L        
Sbjct: 187 AQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEE----AVSVAQRVAGGDL-------- 234

Query: 241 HRQGVYSAVQDMVTTLKAKIAEADEKSEQARRKEQEAQQATLEAEEARRQAERAKAEGML 300
                         T + + A  DE  +                      A ++  + ++
Sbjct: 235 --------------TTRIEPAGKDETGQLL-------------------VALKSMNDSLV 261

Query: 301 QAAVKLEGVVEVLSSASEEL-SAQIEQSDRGAEEQARRVGETATAMEEMNATVLEVARNA 359
               ++    + +++AS E+ S  ++ S R  EEQA  + ETA+AMEE+ +TV + A NA
Sbjct: 262 GIVGQVRMGTQTITTASTEIASGNLDLSSR-TEEQASSLEETASAMEELTSTVKQNADNA 320

Query: 360 GQAADIAENTRRKAESGAEIVGRVVTGISEVQSQSVALKHDMEDLGRQAEAIGQIMNVIS 419
            QA  +A +    A  G  +V +VV  +  + + S                I  I+ VI 
Sbjct: 321 RQANQLAVSASEVASQGGAVVNQVVDTMGSINASS--------------RKIADIIGVID 366

Query: 420 DIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMQATTEVGNAIRGVQGGTR 479
            IA QTN+LALNAA+EAARAGE GRGFAVVA EVR LA+++  A  E+   I G      
Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG------ 420

Query: 480 KNMDNVDRSVKTIEEATQAARLSGEALREIVKMVDTVSDQVRGIATASEQQSAASEEINK 539
            ++  VD   K +E A       G  + E+V+ V  V+D V  I++AS++QS   E++N 
Sbjct: 421 -SVAQVDMGSKLVERA-------GITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNL 472

Query: 540 SVEQVSAISAETAQAMREAATAVQELANQSQVLKRLVDDLK 580
           ++ Q+  ++ + A  + EAA A Q L  Q++ L + V   K
Sbjct: 473 AIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFK 513