Pairwise Alignments

Query, 147 a.a., iron-sulfur cluster-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 50.8 bits (120), Expect = 2e-11
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 91  GCMHCGMCTAICPTSALRMNLENRTVTFELDRCTACGLCTRVCPVAAMHV 140
           GC+ CG C A C   A+ MN E      +  +CTACG C + CP A + +
Sbjct: 141 GCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEI 190



 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 92  CMHCGMCTAICPTSALRMNLENRTVTFELDRCTACGLCTRVCP 134
           C+ CG C   CP  A+   LEN     + ++C +C  C  VCP
Sbjct: 221 CIGCGKCVKTCPFEAI--TLENNLAYIDPNKCKSCRKCVEVCP 261



 Score = 32.0 bits (71), Expect = 8e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 17/71 (23%)

Query: 88  DEEGCMHCGMCTAICPTSALRMNLENRTVT------FELDR-----------CTACGLCT 130
           DE  C  CG C   CP + + +  + +            D+           C  CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 131 RVCPVAAMHVE 141
           + CP  A+ +E
Sbjct: 229 KTCPFEAITLE 239



 Score = 25.4 bits (54), Expect = 8e-04
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 123 CTACGLCTRVCPVAAMHVELENG 145
           C  CG C   C   A+H+  E G
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETG 164