Pairwise Alignments

Query, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  647 bits (1669), Expect = 0.0
 Identities = 419/1161 (36%), Positives = 612/1161 (52%), Gaps = 58/1161 (4%)

Query: 32   LGNAVLDAGRSAVM-VVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWVVMPQHP 90
            LG      G  AV+ V RD   LA     +  F P     + P         W  +P   
Sbjct: 28   LGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPA--------WDCVPYDR 79

Query: 91   LGARNRDAWASRMAALFALGQK--RVPQG--VLITVDNFLSKLPPADLFASHELTLACGD 146
            +   N +  A R+  L  L ++  R P G  VL T    L ++PP  +      +   G 
Sbjct: 80   VSP-NVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGG 138

Query: 147  EMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEEIRL 206
             +    +L+     G+ R + V  PGE AVRG IVDI+PPG   PLRL+ FG+ L+ +R 
Sbjct: 139  RLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRS 198

Query: 207  FDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRGIER 266
            FD  +QR+ G+ D ++L P+S VVL  E  S+  + ++ LF      +  Y  +  G+  
Sbjct: 199  FDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPF 258

Query: 267  HGEGLMPGAYYEAPTVVEEWLPRDAAWILPG-------RKELVDAVEAAQQNWEALFD-- 317
             G       ++E    +  ++P     + PG       R++ +     A++  E++ D  
Sbjct: 259  MGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDGA 318

Query: 318  KQAEEGGARQPRGLVLRDAAPVRQLYEEKD-------------SAGFEPLVMGVERTGVD 364
            K +E+ G     G++     P R   EE +             SA   P V   +    D
Sbjct: 319  KASEKPGG----GMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGD 374

Query: 365  MPERKLHGFVDLFPAPDARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFLKLAEQD 424
               R  H F D+     A    + AL        A   RV+L       R +   +  + 
Sbjct: 375  FLGRPGHEFADI--RARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREH 432

Query: 425  GITPTLRYDPKGRGL-------MAVVAPYRAGVELAWDGTLVIGEDVLQPKTDRSARVAS 477
            G++P +  +     L       + +      G E   D  ++   DVL  +  R  R   
Sbjct: 433  GLSPIVTAETWAEALERAKKATVVLTLILDRGFETP-DLAVISEADVLGDRLSRPVRKKK 491

Query: 478  GAFRGLDKHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDR 537
               + +     L  GDL+VH D+G+ ++ GLE +  GG  +D L + YA ++RLY+PV+ 
Sbjct: 492  LGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVEN 551

Query: 538  LSLVQRFKGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGP 597
            + ++ R+ G++     LD+LGG AWQ+ K K ++ I  +A  L+ + A R++  G    P
Sbjct: 552  IEVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISP 610

Query: 598  IGELYREFEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRA 657
               LY EF A F + ET DQ RAI D L+D+    PMDRL+CGDVGFGKTEVALRAAF  
Sbjct: 611  PEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFAT 670

Query: 658  ASEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVD 717
            A  GRQVA++ PTT+LA QH+ TF+ R AG PV +G LSR V+ +    V    A G +D
Sbjct: 671  AMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLD 730

Query: 718  ILIGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQL 777
            I++GTH LL+  VR  +LGLL++DEEQ FGV HKE+LKQ R +V  LTLTATPIPRTLQL
Sbjct: 731  IVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQL 790

Query: 778  SMSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERT 837
            +++G+RE+S+I T P +R  V T ++  D   ++  + RE  R GQ F+V  R+  +++ 
Sbjct: 791  ALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKV 850

Query: 838  TEYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIV 897
             E +  LVPD R  +AHGQM    LEE M  F  G+ DVLV T IVESGLD PRANT+I+
Sbjct: 851  MERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIII 910

Query: 898  DQAQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQV 957
             +A MFGL QLYQLRGRVGR+  + YA   +P    +S  A +R+ V+  +D LGAGF +
Sbjct: 911  HRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTL 970

Query: 958  AMEDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDPPRESV----ETELNI 1013
            A  DL IRGAGN+LG+ QSGH+  VG+EL+ ++LEEAV   +  P  E        ++ +
Sbjct: 971  ASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREGPGVEEASGAWSPQIQL 1030

Query: 1014 GIPAHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVL 1073
            G P  IP+ Y++D   RL  Y+ ++  TD A   ++  EM DR+G  P E+E  L ++ +
Sbjct: 1031 GTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTI 1090

Query: 1074 KRQLRRMQVQRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATLEWRLDT 1133
            K   RR   ++ D  P    L + +     + G L+ ++GQ+    +L+P   L +R D 
Sbjct: 1091 KVLCRRANAEKVDAGPKGAVLSFRD-NLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDW 1149

Query: 1134 GLAAGARLDAMRGELFRLVPD 1154
             +A   R+  + G+L R + D
Sbjct: 1150 EVAR-ERIQGL-GKLMRTLAD 1168