Pairwise Alignments

Query, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1155 a.a., transcription-repair-coupling factor Mfd from Phaeobacter inhibens DSM 17395

 Score =  622 bits (1603), Expect = 0.0
 Identities = 402/1121 (35%), Positives = 593/1121 (52%), Gaps = 47/1121 (4%)

Query: 44   VMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWVVMPQHPLGARNRDAWASRM 103
            V V RD + +   R  L  F+PD      P         W  +P   +   N D  A+RM
Sbjct: 32   VHVARDDKRMEATRAALAFFAPDMPVISFP--------GWDCLPYDRVSP-NADIAAARM 82

Query: 104  AALFALGQKRVPQGVLITVDNFLSKLPPADLFASHELTLACGDEMAPELVLEQAVD-WGF 162
            A L AL  +   Q VL+T  N  ++  PA         +A  D    E  L   +   GF
Sbjct: 83   ATLAALVHQMPGQFVLLTTLNAATQRVPARQVLKDAAFVAEVDRRIDEEALRGYLTRMGF 142

Query: 163  DRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEEIRLFDASNQRSLGKLDEMV 222
             +   V  PG+ AVRG I+DIYPPG   P+RL+ FG+ L+  R FD + QR+  KL  + 
Sbjct: 143  TKSPTVMEPGDFAVRGGIIDIYPPGQSGPVRLDLFGDVLDGARRFDPATQRTTEKLSVVE 202

Query: 223  LLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRGIERHGEGLMPGAYYEAPTV 282
            L PVS V+L     ++    ++  F      +  Y  +  G +  G       ++E    
Sbjct: 203  LAPVSEVILDEAAVTRFRQNYRIEFGAAGTDDPLYEAVSAGRKYQGIEHWLPFFHERLET 262

Query: 283  VEEWLPRDAAWILPGRKELVDAVEAAQ-QNWEALFDKQAEEGGARQPRGLVLRDAAPVRQ 341
            + ++LP+           L D V  A+   W+++ D+      A   +G +     PV  
Sbjct: 263  LFDYLPQATV-------TLDDQVTPARLARWDSIVDQYETRKIAMAQKGRMDTVYKPVPP 315

Query: 342  LYEEKDSAGFEPLVMGVERTGV--DMPERKLHGFVDLFPAPDARDRPWQALVA-GLHRFV 398
                 D   +E  + G  R      +P+    G +D          P + L +  L + +
Sbjct: 316  GLLYLDDDAWEAAI-GDHRVIQFHPLPQASGPGVIDAGGRIGRNFSPERQLESVSLFKSL 374

Query: 399  ATHARVLLCFG-------NERGRRKFLKLAEQDGITPTLRYDPKGR----GLMAVVAPYR 447
            A H +  +  G       +E  R +   L E +G+   +  +   R    GL   V    
Sbjct: 375  ADHIKARMQVGPVVVASYSEGARERLTGLIEDEGLAEVIAINDGTRIGKSGLHLAVWALE 434

Query: 448  AGVELAWDGTLVIGEDVLQPKTDRSARVASGAFRGLDKHEGLQPGDLLVHRDYGVARFVG 507
             G E   D T++  +DVL  +  R+ +    A   L + + L PGDL+VH D+G+ R+ G
Sbjct: 435  HGFETD-DLTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYKG 493

Query: 508  LERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGADDTKPSLDRLGGGAWQSSKD 567
            LE +   G  ++ +LLEYA   +LYLPV+ + L+ ++ G D+    LDRLGGGAWQ+ K 
Sbjct: 494  LEVVTAAGAAHECILLEYAEHSKLYLPVENIELLSKY-GHDEGL--LDRLGGGAWQAKKA 550

Query: 568  KARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEASFGFEETPDQARAIQDVLED 627
            K ++ I ++A  L+ + A R + K     P    + EF A F ++ET DQ RAI +V+ED
Sbjct: 551  KLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQETDDQLRAISEVMED 610

Query: 628  MDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRSRLAG 687
            +    PMDRL+CGDVGFGKTEVA+RAAF AA  G QVA++ PTT+LA QH   F  R  G
Sbjct: 611  LQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLARQHAAAFAQRFRG 670

Query: 688  FPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLGLLVLDEEQRFG 747
            FP+ V  LSRFV+ ++  +     AKG +DI++GTH LL+  VR  NLGLL++DEEQ FG
Sbjct: 671  FPLEVRQLSRFVTAKEAAKTREGMAKGTIDIVVGTHALLAKSVRFQNLGLLIIDEEQHFG 730

Query: 748  VRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVATALIERDD 807
            V HKE+LKQ R ++  LTLTATPIPRTLQLS++G+R+LS+I T P +R  + T + E D 
Sbjct: 731  VAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLAIRTYVSEFDA 790

Query: 808  AALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPDARVGMAHGQMTERALEETMH 867
              ++  L RE  R GQ F+V  R+  L     ++++ +P+    +AHGQ+    L++ M+
Sbjct: 791  VTIREALLREHYRGGQSFYVVPRITDLPDVEAFLQEQLPELSYVVAHGQLAAGDLDDRMN 850

Query: 868  RFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDRQAYAIFV 927
             F+ G+ DVL+ T IVESGLD P ANT++V +A MFGL QLYQ+RGRVGRS  +AYA   
Sbjct: 851  AFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGRSKTRAYAYLT 910

Query: 928  VPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNILGEAQSGHMTRVGLELF 987
                  L+  A +R+RV+  +D LGAGF +A +DL IRGAGN+LGE QSG M  VG EL+
Sbjct: 911  TKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIRGAGNLLGEEQSGQMRDVGYELY 970

Query: 988  LEMLEEAVTRLKG------DPPRESVETELNIGIPAHIPEGYIEDARDRLRFYKALSSAT 1041
              MLEEA+ ++K           +    ++N+G+P  IPE Y+ D   RL  Y+ LS  +
Sbjct: 971  QSMLEEAIAKIKSGELEGLSGSDDQWAPQINLGVPVLIPENYVPDLDVRLGLYRRLSDLS 1030

Query: 1042 DAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQVQRADIYPDKVRLVWDERQT 1101
                 +    E+ DR+G  P E+ T + ++ +K   +R  + + D  P    + +   + 
Sbjct: 1031 TKVELEGFAAELIDRFGALPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKGATIQFHNDKF 1090

Query: 1102 AVDIGRLIEWVGQHADRARLQPPATL---EWRLDTGLAAGA 1139
            A   G L+E++      A+++    +   +W+ D+    GA
Sbjct: 1091 ASPQG-LVEFIQAQDGLAKVKDNKIVVRRDWKKDSDKIKGA 1130