Pairwise Alignments

Query, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  509 bits (1312), Expect = e-148
 Identities = 267/654 (40%), Positives = 399/654 (61%), Gaps = 22/654 (3%)

Query: 491  PGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGADDT 550
            PGD +VH D+G+ RF GL R+  G    + L L +  +D +++ +  L  V ++KG D  
Sbjct: 437  PGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSKYKGKDGE 496

Query: 551  KPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEASFG 610
             P L++LG GAW+  KD+ +  I+ IA DL+++Y+ R+  KG++Y P   L RE EASF 
Sbjct: 497  APRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQRELEASFI 556

Query: 611  FEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPT 670
            +E+TPDQ++A  +V  DM+   PMDRLVCGDVGFGKTEVA+RAAF+A ++ +QVA+L PT
Sbjct: 557  YEDTPDQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPT 616

Query: 671  TVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDV 730
            TVLA QH+QTFR RL G P  V  LSR  +  +   VL    +G V ILIGTHR+L  DV
Sbjct: 617  TVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDV 676

Query: 731  RLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIET 790
            +  +LGLL++DEEQ+FGV  KEKL+Q + NVD LT+TATPIPRTLQ S+ G R+LSVI T
Sbjct: 677  QFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIST 736

Query: 791  APPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPDARV 850
             PP R P+ T +   ++  +   +  E++R GQVF+V+NR+  L      + + +PD RV
Sbjct: 737  PPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIERHIPDCRV 796

Query: 851  GMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQ 910
             + HGQM    LE+ +  F + + DVL+ T I+ESG+D P ANT+I++QAQ FGL  L+Q
Sbjct: 797  AIGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQ 856

Query: 911  LRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNI 970
            +RGRVGRS+++A+   + P   +L+   + R++ I +   LG+G  +AM+DL IRGAGN+
Sbjct: 857  MRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNL 916

Query: 971  LGEAQSGHMTRVGLELFLEMLEEAVTRLKGDPPRESV-----------------ETELNI 1013
            LG  QSG +  +G E + ++L EAV  L+ D   E                   E ++  
Sbjct: 917  LGAEQSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEFVDECQIES 976

Query: 1014 GIPAHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVL 1073
             +   +P  Y+  + +R+  Y+ L   T           + DR+G  PPE +  L ++ L
Sbjct: 977  DLELLLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQELLRIVPL 1036

Query: 1074 KRQLRRMQVQRADIYPDKVRLVWDER-----QTAVDIGRLIEWVGQHADRARLQ 1122
            +R   R+ V++  +   ++ L +          +   G++I+++ ++  R  L+
Sbjct: 1037 RRLAARLGVEKVFLKGGRMTLFFVSNADSPFYQSQAFGKMIDYMMKYTRRCDLR 1090



 Score = 61.2 bits (147), Expect = 4e-13
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 140 LTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGE 199
           L L  G+++    + +    +GF+ V  V  PG+ AVRG I+D++    E P R++FFG+
Sbjct: 144 LKLNVGEKLDTTFITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGD 203

Query: 200 TLEEIRLFDASNQRSLGKLDEMVLLP 225
            +E IR F+  +Q S  + + + ++P
Sbjct: 204 EVESIRTFEVESQLSRERKEGVAIVP 229